RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 EMP1P54849 157 aa9.06□□□□□ -0.96
SCAF11-208ENST00000546534 C22orf42Q6IC83 251 aa9.06□□□□□ -0.96
SCAF11-208ENST00000546534 ZNF114Q8NC26 417 aa9.06□□□□□ -0.96
SCAF11-208ENST00000546534 C1QTNF4Q9BXJ3 329 aa9.06□□□□□ -0.96
SCAF11-208ENST00000546534 TRAV18A0A075B6X5 111 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 TRDV1A0A1B0GX56 115 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 NOTOA8MTQ0 251 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 TMEM50AO95807 157 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 CRYBB3P26998 211 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 P2RY1P47900 373 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 PPP5CP53041 499 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 NUTF2P61970 127 aaKnown RBP9.05□□□□□ -0.96
SCAF11-208ENST00000546534 PSMG4Q5JS54 123 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 ZNF367Q7RTV3 350 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 TSPAN14Q8NG11 270 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 BORCS5Q969J3 196 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 TSC22D3Q99576 134 aa9.05□□□□□ -0.96
SCAF11-208ENST00000546534 HTN3P15516 51 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 HERV-K104P61576 105 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 DHRS2Q13268 280 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 PRSS48Q7RTY5 328 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 OR5AP2Q8NGF4 316 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 LGALS14Q8TCE9 139 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 METTL26Q96S19 204 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 NEU1Q99519 415 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 NDUFB11Q9NX14 153 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 RHBDL2Q9NX52 303 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 DAPK2Q9UIK4 370 aa9.04□□□□□ -0.96
SCAF11-208ENST00000546534 APOBP04114 4563 aaKnown RBP9.04□□□□□ -0.96
SCAF11-208ENST00000546534 NACAE9PAV3 2078 aa9.03□□□□□ -0.96
SCAF11-208ENST00000546534 TMEM189A5PLL7 270 aa9.03□□□□□ -0.96
SCAF11-208ENST00000546534 ZNF705FA8MVS1 300 aaPredicted RBP9.03□□□□□ -0.96
SCAF11-208ENST00000546534 ZNF705DP0CH99 300 aaPredicted RBP9.03□□□□□ -0.96
SCAF11-208ENST00000546534 ZNF705BP0CI00 300 aaPredicted RBP9.03□□□□□ -0.96
SCAF11-208ENST00000546534 FGF9P31371 208 aaPredicted RBP9.03□□□□□ -0.96
SCAF11-208ENST00000546534 PRCDQ00LT1 54 aa9.03□□□□□ -0.96
SCAF11-208ENST00000546534 ZNF705AQ6ZN79 300 aaPredicted RBP9.03□□□□□ -0.96
SCAF11-208ENST00000546534 DKK2Q9UBU2 259 aa9.03□□□□□ -0.96
SCAF11-208ENST00000546534 HELTA6NFD8 242 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 H3BMM0 161 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 HSPE1P61604 102 aaKnown RBP9.02□□□□□ -0.97
SCAF11-208ENST00000546534 ERHP84090 104 aaKnown RBP9.02□□□□□ -0.97
SCAF11-208ENST00000546534 SPINK9Q5DT21 86 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 FAM222AQ5U5X8 452 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 TMEM88Q6PEY1 159 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 DHRS11Q6UWP2 260 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 OR4A16Q8NH70 328 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 NIPSNAP3BQ9BS92 247 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 YTHDF1Q9BYJ9 559 aaKnown RBP9.02□□□□□ -0.97
SCAF11-208ENST00000546534 RNF167Q9H6Y7 350 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 EHFQ9NZC4 300 aa9.02□□□□□ -0.97
SCAF11-208ENST00000546534 IGHV3OR16-12A0A075B7B8 117 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 SMIM9A6NGZ8 99 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 FAM3BP58499 235 aaPredicted RBP9.01□□□□□ -0.97
SCAF11-208ENST00000546534 TBCEQ15813 527 aaPredicted RBP9.01□□□□□ -0.97
SCAF11-208ENST00000546534 KCTD21Q4G0X4 260 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 H2BFWTQ7Z2G1 175 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 C6orf223Q8N319 242 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 TMEM230Q96A57 120 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 SLC25A38Q96DW6 304 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 NARS2Q96I59 477 aaKnown RBP9.01□□□□□ -0.97
SCAF11-208ENST00000546534 SEC22AQ96IW7 307 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 ZNF2Q9BSG1 426 aaPredicted RBP9.01□□□□□ -0.97
SCAF11-208ENST00000546534 VCXQ9H320 206 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 AUNIPQ9H7T9 357 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 MRPL36Q9P0J6 103 aaKnown RBP9.01□□□□□ -0.97
SCAF11-208ENST00000546534 RRP15Q9Y3B9 282 aaKnown RBP9.01□□□□□ -0.97
SCAF11-208ENST00000546534 TMED3Q9Y3Q3 217 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 RFNGQ9Y644 331 aa9.01□□□□□ -0.97
SCAF11-208ENST00000546534 DMBT1Q9UGM3 2413 aaPredicted RBP9□□□□□ -0.97
SCAF11-208ENST00000546534 NBDYA0A0U1RRE5 68 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 TEX48A0A1B0GUV7 120 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 MEIS3P1A6NDR6 274 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 FAM90A26D6RGX4 464 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 GPR31O00270 319 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 IGKV1-39P01597 117 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 IGKV1D-39P04432 117 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 CBX5P45973 191 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 RFX2P48378 723 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 EIF2B2P49770 351 aaKnown RBP9□□□□□ -0.97
SCAF11-208ENST00000546534 SFXN4Q6P4A7 337 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 SPATA12Q7Z6I5 190 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 CMTM1Q8IZ96 169 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 OR5H6Q8NGV6 325 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 GLMPQ8WWB7 406 aa9□□□□□ -0.97
SCAF11-208ENST00000546534 DNAH5Q8TE73 4624 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 CLN5O75503 358 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 IGKV1-17P01599 117 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 SNCAP37840 140 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 FXYD7P58549 80 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 SNRPD3P62318 126 aaKnown RBP8.99□□□□□ -0.97
SCAF11-208ENST00000546534 OXA1LQ15070 435 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 MLANAQ16655 118 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 IZUMO4Q1ZYL8 232 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 C16orf54Q6UWD8 224 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 ATG101Q9BSB4 218 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 FXYD6Q9H0Q3 95 aa8.99□□□□□ -0.97
SCAF11-208ENST00000546534 FNDC4Q9H6D8 234 aaPredicted RBP8.99□□□□□ -0.97
SCAF11-208ENST00000546534 TXNL4BQ9NX01 149 aaKnown RBP8.99□□□□□ -0.97
SCAF11-208ENST00000546534 IGKV3-20P01619 116 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms