RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 ACSM6Q6P461 480 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 LCN15Q6UWW0 184 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 ZNF562Q6V9R5 426 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 PQLC2Q6ZP29 291 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 SLC16A13Q7RTY0 426 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 THAP8Q8NA92 274 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 TMEM116Q8NCL8 245 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 CLRN3Q8NCR9 226 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 OR1L4Q8NGR5 311 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 GATAD1Q8WUU5 269 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 RAB24Q969Q5 203 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 PFDN5Q99471 154 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 MGST2Q99735 147 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 NIPSNAP3BQ9BS92 247 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 MRPL32Q9BYC8 188 aaKnown RBP4.95□□□□□ -1.62
SYNE1-239ENST00000545694 SIRT7Q9NRC8 400 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 SLC45A2Q9UMX9 530 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 RNF24Q9Y225 148 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 FAM96BQ9Y3D0 163 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 ABCA2Q9BZC7 2435 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 NAV2Q8IVL1 2488 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 CSPG4Q6UVK1 2322 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 A0A087WWC5 75 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 CXorf65A6NEN9 183 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 F6UZH7 168 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 CNIH1O95406 144 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 STAG3L2P0CL84 134 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 STAG3L3P0CL85 134 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 ZFP36P26651 326 aaKnown RBP4.94□□□□□ -1.62
SYNE1-239ENST00000545694 S100A7P31151 101 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 CCL20P78556 96 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 WT1-ASQ06250 92 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 GAMTQ14353 236 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 MMDQ15546 238 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 ZNF726P1Q15940 193 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 C5orf64Q2M2E5 130 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 MRGPRG-AS1Q2M3A8 158 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 LRRC75A-AS1Q8N1F1 130 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 Q8N6K4 173 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 STPG3Q8N7X2 389 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 STXBP6Q8NFX7 210 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 SRSF12Q8WXF0 261 aaKnown RBP4.94□□□□□ -1.62
SYNE1-239ENST00000545694 C1orf159Q96HA4 380 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 TRGV9Q99603 122 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 SSX3Q99909 188 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 TCEAL7Q9BRU2 100 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 TMEM231Q9H6L2 316 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 VSIRQ9H7M9 311 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 SMCO4Q9NRQ5 59 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 TMEM167BQ9NRX6 74 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 BEX4Q9NWD9 120 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-239ENST00000545694 TMEM242Q9NWH2 141 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 THYN1Q9P016 225 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 GNG13Q9P2W3 67 aa4.94□□□□□ -1.62
SYNE1-239ENST00000545694 F11RQ9Y624 299 aaKnown RBP4.94□□□□□ -1.62
SYNE1-239ENST00000545694 TRAV30A0A087WSZ9 112 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 IGHV3-72A0A0B4J1Y9 119 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 TRAV20A0A0B4J274 112 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 TCRBV4S1A1TA0A5B7 111 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 CGB1A6NKQ9 187 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 NPIPB5A8MRT5 1133 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 B4DSR2 109 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 J3QLI3 93 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 NDUFS7O75251 213 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 YIF1AO95070 293 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 IGKV1D-33P01593 117 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 IGKV1-33P01594 117 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 HLA-DRB1P01911 266 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 OR5G3P0C626 314 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 HIST1H1BP16401 226 aaKnown RBP4.93□□□□□ -1.62
SYNE1-239ENST00000545694 PLP1P60201 277 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 LCN2P80188 198 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 BTN1A1Q13410 526 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 GUCA2BQ16661 112 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 HAGHQ16775 308 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 KLK9Q2XQG4 91 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 FAM122CQ6P4D5 195 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 CYP2G1PQ6ZSU1 146 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 C15orf54Q8N8G6 183 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 OR10W1Q8NGF6 305 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 RPUSD4Q96CM3 377 aaKnown RBP4.93□□□□□ -1.62
SYNE1-239ENST00000545694 TVP23CQ96ET8 276 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 ZNF48Q96MX3 618 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-239ENST00000545694 BBC3Q96PG8 261 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-239ENST00000545694 TBX15Q96SF7 602 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 ATP6V0BQ99437 205 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 RARRES2Q99969 163 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 TECRQ9NZ01 308 aaKnown RBP4.93□□□□□ -1.62
SYNE1-239ENST00000545694 KLK9Q9UKQ9 250 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 FUT9Q9Y231 359 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 HILPDAQ9Y5L2 63 aa4.93□□□□□ -1.62
SYNE1-239ENST00000545694 MAP1AP78559 2803 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-239ENST00000545694 KMT2BQ9UMN6 2715 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-239ENST00000545694 UTP20O75691 2785 aaKnown RBP4.92□□□□□ -1.62
SYNE1-239ENST00000545694 ZFP92A6NM28 416 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 TEX22C9J3V5 150 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 C9JQL5 133 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 M0QZK8 103 aa4.92□□□□□ -1.62
SYNE1-239ENST00000545694 DNASE2O00115 360 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-239ENST00000545694 NPFFO15130 113 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms