RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 LAMTOR1Q6IAA8 161 aa11.85□□□□□ -0.51
CCDC78-216ENST00000544996 SLC16A13Q7RTY0 426 aa11.85□□□□□ -0.51
CCDC78-216ENST00000544996 NOXA1Q86UR1 476 aa11.85□□□□□ -0.51
CCDC78-216ENST00000544996 C19orf73Q9NVV2 129 aa11.85□□□□□ -0.51
CCDC78-216ENST00000544996 SELENOKQ9Y6D0 94 aa11.85□□□□□ -0.51
CCDC78-216ENST00000544996 IGHV3OR16-8A0A075B7F1 116 aa11.84□□□□□ -0.51
CCDC78-216ENST00000544996 A0A1B0GU03 582 aa11.84□□□□□ -0.51
CCDC78-216ENST00000544996 SCAF4O95104 1147 aaKnown RBP11.84□□□□□ -0.51
CCDC78-216ENST00000544996 NXPH3O95157 252 aa11.84□□□□□ -0.51
CCDC78-216ENST00000544996 TNFRSF9Q07011 255 aa11.84□□□□□ -0.51
CCDC78-216ENST00000544996 C2orf83Q53S99 150 aa11.84□□□□□ -0.51
CCDC78-216ENST00000544996 SLC24A4Q8NFF2 622 aa11.84□□□□□ -0.51
CCDC78-216ENST00000544996 OR52B4Q8NGK2 314 aa11.84□□□□□ -0.51
CCDC78-216ENST00000544996 OR1S1Q8NH92 325 aa11.84□□□□□ -0.51
CCDC78-216ENST00000544996 C7orf50Q9BRJ6 194 aaKnown RBP11.84□□□□□ -0.51
CCDC78-216ENST00000544996 ZMAT4Q9H898 229 aa11.84□□□□□ -0.51
CCDC78-216ENST00000544996 ZNF207O43670 478 aaKnown RBP11.83□□□□□ -0.52
CCDC78-216ENST00000544996 NDUFB6O95139 128 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 SFT2D2O95562 160 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 CD7P09564 240 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 IL7P13232 177 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 UBE2MP61081 183 aaKnown RBP11.83□□□□□ -0.52
CCDC78-216ENST00000544996 PPP1R1AQ13522 171 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 LRTM2Q8N967 370 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 OR4X1Q8NH49 305 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 RNASEH2CQ8TDP1 164 aaKnown RBP11.83□□□□□ -0.52
CCDC78-216ENST00000544996 SDHCQ99643 169 aaPredicted RBP11.83□□□□□ -0.52
CCDC78-216ENST00000544996 GINS3Q9BRX5 216 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 HSPB7Q9UBY9 170 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 TMED3Q9Y3Q3 217 aa11.83□□□□□ -0.52
CCDC78-216ENST00000544996 TRAV14DV4A0A0A6YYC5 116 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 OR11H12B2RN74 326 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 TMEM50AO95807 157 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 IFNA10P01566 189 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 ETFRF1Q6IPR1 90 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 ZNF600Q6ZNG1 722 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 TMEM116Q8NCL8 245 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 DTD1Q8TEA8 209 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 OR10C1Q96KK4 312 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 WWC2-AS2Q96NR7 200 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 SPAG8Q99932 426 aaPredicted RBP11.82□□□□□ -0.52
CCDC78-216ENST00000544996 FNDC4Q9H6D8 234 aaPredicted RBP11.82□□□□□ -0.52
CCDC78-216ENST00000544996 SMPXQ9UHP9 88 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 U3KQ87 197 aa11.82□□□□□ -0.52
CCDC78-216ENST00000544996 TRAV30A0A087WSZ9 112 aa11.81□□□□□ -0.52
CCDC78-216ENST00000544996 IGHV7-4-1A0A0J9YVY3 117 aa11.81□□□□□ -0.52
CCDC78-216ENST00000544996 CLN5O75503 358 aa11.81□□□□□ -0.52
CCDC78-216ENST00000544996 SLC25A4P12235 298 aa11.81□□□□□ -0.52
CCDC78-216ENST00000544996 SLC25A6P12236 298 aa11.81□□□□□ -0.52
CCDC78-216ENST00000544996 NPY1RP25929 384 aa11.81□□□□□ -0.52
CCDC78-216ENST00000544996 BMI1P35226 326 aa11.81□□□□□ -0.52
CCDC78-216ENST00000544996 RBKSQ9H477 322 aa11.81□□□□□ -0.52
CCDC78-216ENST00000544996 TSPAN4O14817 238 aa11.8□□□□□ -0.52
CCDC78-216ENST00000544996 ATP5IP56385 69 aaPredicted RBP11.8□□□□□ -0.52
CCDC78-216ENST00000544996 MLANAQ16655 118 aa11.8□□□□□ -0.52
CCDC78-216ENST00000544996 CNPY1Q3B7I2 92 aa11.8□□□□□ -0.52
CCDC78-216ENST00000544996 TOMM20LQ6UXN7 152 aa11.8□□□□□ -0.52
CCDC78-216ENST00000544996 LINC00299Q6ZSB3 139 aa11.8□□□□□ -0.52
CCDC78-216ENST00000544996 DEFB125Q8N687 156 aa11.8□□□□□ -0.52
CCDC78-216ENST00000544996 RCHY1Q96PM5 261 aa11.8□□□□□ -0.52
CCDC78-216ENST00000544996 RHPN1-AS1Q9BWJ2 59 aa11.8□□□□□ -0.52
CCDC78-216ENST00000544996 PUS1Q9Y606 427 aaKnown RBP eCLIP11.8□□□□□ -0.52
CCDC78-216ENST00000544996 DNAH9Q9NYC9 4486 aa11.79□□□□□ -0.52
CCDC78-216ENST00000544996 C9orf170A2RU37 121 aa11.79□□□□□ -0.52
CCDC78-216ENST00000544996 HOXB5P09067 269 aa11.79□□□□□ -0.52
CCDC78-216ENST00000544996 COQ8AQ8NI60 647 aa11.79□□□□□ -0.52
CCDC78-216ENST00000544996 TM2D3Q9BRN9 247 aa11.79□□□□□ -0.52
CCDC78-216ENST00000544996 SRD5A3Q9H8P0 318 aa11.79□□□□□ -0.52
CCDC78-216ENST00000544996 FLVCR2Q9UPI3 526 aa11.79□□□□□ -0.52
CCDC78-216ENST00000544996 COL7A1Q02388 2944 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 IGHV3-49A0A0A0MS15 119 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 OR4C46A6NHA9 309 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 FAM90A26D6RGX4 464 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 CHEK1O14757 476 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 PITX3O75364 302 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 MED6O75586 246 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 IFNA4P05014 189 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 CD5P06127 495 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 OR4E1P0C645 316 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 RND2P52198 227 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 HAGHQ16775 308 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 C4orf46Q504U0 113 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 PRSS54Q6PEW0 395 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 ZNF414Q96IQ9 312 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 SPATA25Q9BR10 227 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 CCDC32Q9BV29 185 aa11.78□□□□□ -0.52
CCDC78-216ENST00000544996 MRPL36Q9P0J6 103 aaKnown RBP11.78□□□□□ -0.52
CCDC78-216ENST00000544996 LYRM1O43325 122 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 NPPCP23582 126 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 BTCP35070 178 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 DHRS2Q13268 280 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 GGNBP1Q5YKI7 109 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 LYG2Q86SG7 212 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 OR1S2Q8NGQ3 325 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 TMEM170AQ8WVE7 144 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 S100ZQ8WXG8 99 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 CIB3Q96Q77 187 aaPredicted RBP11.77□□□□□ -0.53
CCDC78-216ENST00000544996 RNF2Q99496 336 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 WFDC10AQ9H1F0 79 aa11.77□□□□□ -0.53
CCDC78-216ENST00000544996 TMEM231Q9H6L2 316 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms