RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 NAV3Q8IVL0 2385 aa14.49□□□□□ -0.09
VIM-209ENST00000544301 TRAV5A0A0B4J249 113 aa14.49□□□□□ -0.09
VIM-209ENST00000544301 FSTL3O95633 263 aa14.49□□□□□ -0.09
VIM-209ENST00000544301 AMBPP02760 352 aa14.49□□□□□ -0.09
VIM-209ENST00000544301 THAP8Q8NA92 274 aa14.49□□□□□ -0.09
VIM-209ENST00000544301 MRPL36Q9P0J6 103 aaKnown RBP14.49□□□□□ -0.09
VIM-209ENST00000544301 TRAPPC1Q9Y5R8 145 aa14.49□□□□□ -0.09
VIM-209ENST00000544301 A0A1W2PRE2 83 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 TCRBV4S1A1TA0A5B7 111 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 IGLC7A0M8Q6 106 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 GNG4P50150 75 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 ZNF90Q03938 601 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 CENPWQ5EE01 88 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 IL36BQ9NZH7 164 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 RAXQ9Y2V3 346 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 BUB1B-PAK6H3BSN5 160 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 SLC17A3O00476 420 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 COX7A2P2O60397 106 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 CRYGBP07316 175 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 CNTFRP26992 372 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 SUMO1P63165 101 aaKnown RBP14.48□□□□□ -0.09
VIM-209ENST00000544301 CLEC7AQ9BXN2 247 aa14.48□□□□□ -0.09
VIM-209ENST00000544301 OR5I1Q13606 314 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 DNLZQ5SXM8 178 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 PATE2Q6UY27 113 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 MMD2Q8IY49 270 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 PFDN5Q99471 154 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 COL25A1Q9BXS0 654 aaPredicted RBP14.47□□□□□ -0.09
VIM-209ENST00000544301 INSIG2Q9Y5U4 225 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 PPIAL4CA0A0B4J2A2 164 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 IGHV1-3A0A0C4DH29 117 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 PPIAL4GP0DN37 164 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 HIST1H1BP16401 226 aaKnown RBP14.47□□□□□ -0.09
VIM-209ENST00000544301 CNN1P51911 297 aaKnown RBP14.47□□□□□ -0.09
VIM-209ENST00000544301 UCNP55089 124 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 C10orf113Q5VZT2 155 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 PVRIGQ6DKI7 326 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 ST6GALNAC3Q8NDV1 305 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 BEND2Q8NDZ0 799 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 OR5AU1Q8NGC0 362 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 OR1L4Q8NGR5 311 aa14.47□□□□□ -0.09
VIM-209ENST00000544301 RPL27AP46776 148 aaKnown RBP14.46□□□□□ -0.09
VIM-209ENST00000544301 SELENOTP62341 195 aa14.46□□□□□ -0.09
VIM-209ENST00000544301 UBE2L3P68036 154 aaKnown RBP14.46□□□□□ -0.09
VIM-209ENST00000544301 CDSNQ15517 529 aa14.46□□□□□ -0.09
VIM-209ENST00000544301 TNXAQ16473 311 aa14.46□□□□□ -0.09
VIM-209ENST00000544301 HCP5Q6MZN7 132 aa14.46□□□□□ -0.09
VIM-209ENST00000544301 ZNF355PQ9NSJ1 428 aa14.46□□□□□ -0.09
VIM-209ENST00000544301 MALRD1Q5VYJ5 2156 aa14.46□□□□□ -0.09
VIM-209ENST00000544301 LRBAP50851 2863 aa14.46□□□□□ -0.1
VIM-209ENST00000544301 ANKHD1Q8IWZ3 2542 aaKnown RBP14.45□□□□□ -0.1
VIM-209ENST00000544301 TRAV9-1A0A075B6T8 112 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 PLXNB1O43157 2135 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 RBP4P02753 201 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 MFAP2P55001 183 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 ERVFC1-1P60608 527 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 YPEL3P61236 119 aaPredicted RBP14.45□□□□□ -0.1
VIM-209ENST00000544301 RUSC1-AS1Q66K80 236 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 MRPL41Q8IXM3 137 aaKnown RBP14.45□□□□□ -0.1
VIM-209ENST00000544301 PRDM13Q9H4Q3 707 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 SIGLEC9Q9Y336 463 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 V9GYV3 84 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 CRYGCP07315 174 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 RD3LP0DJH9 198 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 COX7A1P24310 79 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 ADORA2A-AS1P86434 159 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 KLRB1Q12918 225 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 C8orf46Q8TAG6 207 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 MISP3Q96FF7 219 aa14.45□□□□□ -0.1
VIM-209ENST00000544301 PYYP10082 97 aa14.44□□□□□ -0.1
VIM-209ENST00000544301 COMPP49747 757 aaPredicted RBP14.44□□□□□ -0.1
VIM-209ENST00000544301 BPIFB3P59826 476 aa14.44□□□□□ -0.1
VIM-209ENST00000544301 ETFRF1Q6IPR1 90 aa14.44□□□□□ -0.1
VIM-209ENST00000544301 SPTA1P02549 2419 aa14.44□□□□□ -0.1
VIM-209ENST00000544301 C22orf46C9J442 243 aa14.44□□□□□ -0.1
VIM-209ENST00000544301 LGALS4P56470 323 aa14.44□□□□□ -0.1
VIM-209ENST00000544301 TIGITQ495A1 244 aa14.44□□□□□ -0.1
VIM-209ENST00000544301 C19orf35Q6ZS72 473 aa14.44□□□□□ -0.1
VIM-209ENST00000544301 PAXXQ9BUH6 204 aa14.44□□□□□ -0.1
VIM-209ENST00000544301 IGF2RP11717 2491 aa14.43□□□□□ -0.1
VIM-209ENST00000544301 IGLV2-8P01709 118 aa14.43□□□□□ -0.1
VIM-209ENST00000544301 APELAP0DMC3 54 aa14.43□□□□□ -0.1
VIM-209ENST00000544301 RPEL1Q2QD12 228 aa14.43□□□□□ -0.1
VIM-209ENST00000544301 OR8B3Q8NGG8 313 aa14.43□□□□□ -0.1
VIM-209ENST00000544301 IGF2BP2-AS1Q96M15 143 aa14.43□□□□□ -0.1
VIM-209ENST00000544301 OR8B2Q96RD0 313 aa14.43□□□□□ -0.1
VIM-209ENST00000544301 DCHS2Q6V1P9 2916 aa14.43□□□□□ -0.1
VIM-209ENST00000544301 GCGP01275 180 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 ADMP35318 185 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 JOSD1Q15040 202 aaPredicted RBP14.42□□□□□ -0.1
VIM-209ENST00000544301 RPEQ96AT9 228 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 TNFRSF19Q9NS68 423 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 AMMECR1Q9Y4X0 333 aaPredicted RBP14.42□□□□□ -0.1
VIM-209ENST00000544301 RELNP78509 3460 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 TRAV20A0A0B4J274 112 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 LY6LH3BQJ8 138 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 MOSP00540 346 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 PPP1R27Q86WC6 154 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 LY6G5BQ8NDX9 201 aa14.42□□□□□ -0.1
VIM-209ENST00000544301 RNASE7Q9H1E1 156 aaKnown RBP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 131.4 ms