RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 STXBP6Q8NFX7 210 aa7.96□□□□□ -1.13
SS18-205ENST00000542420 TIMD4Q96H15 378 aa7.96□□□□□ -1.13
SS18-205ENST00000542420 SEPSECSQ9HD40 501 aaKnown RBP7.96□□□□□ -1.13
SS18-205ENST00000542420 PTPRQQ9UMZ3 2332 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 TNCP24821 2201 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 TCRBV4S1A1TA0A5B7 111 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 CGB1A6NKQ9 187 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 BUB1B-PAK6H3BSN5 160 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 NDUFB4O95168 129 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 LIPFP07098 398 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 RPL19P84098 196 aaKnown RBP7.96□□□□□ -1.14
SS18-205ENST00000542420 PRSS8Q16651 343 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 C1orf194Q5T5A4 169 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 C22orf15Q8WYQ4 148 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 SLC25A33Q9BSK2 321 aa7.96□□□□□ -1.14
SS18-205ENST00000542420 LY6LH3BQJ8 138 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 M0QZK8 103 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 BRS3P32247 399 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 CDKN1BP46527 198 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 PDLIM4P50479 330 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 ADORA2A-AS1P86434 159 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 MRGPRG-AS1Q2M3A8 158 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 COX19Q49B96 90 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 C4orf17Q53FE4 359 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 C11orf71Q6IPW1 123 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 C1orf122Q6ZSJ8 110 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 KIR3DL3Q8N743 410 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 OR1L6Q8NGR2 347 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 SFRP2Q96HF1 295 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 TRGV9Q99603 122 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 YTHDF2Q9Y5A9 579 aaKnown RBP7.95□□□□□ -1.14
SS18-205ENST00000542420 IGKV1OR2-108A0A075B7D4 117 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 FAM90A27PA6NNH2 459 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 ZNF705GA8MUZ8 300 aaPredicted RBP7.95□□□□□ -1.14
SS18-205ENST00000542420 HAX1O00165 279 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 MYOD1P15172 320 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 RPL27AP46776 148 aaKnown RBP7.95□□□□□ -1.14
SS18-205ENST00000542420 PLP1P60201 277 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 WT1-ASQ06250 92 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 ACTL10Q5JWF8 245 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 DTX2Q86UW9 622 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 OR11H6Q8NGC7 330 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 OR1P1Q8NH06 330 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 DNAJC4Q9NNZ3 241 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 ZNRD1Q9P1U0 126 aa7.95□□□□□ -1.14
SS18-205ENST00000542420 POLEQ07864 2286 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 PPIAL4CA0A0B4J2A2 164 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 IGHV1-3A0A0C4DH29 117 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 TMEM238LA0A1B0GVL6 79 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 OOSP1A8MZH6 123 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 SIAH2O43255 324 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 PPIAL4GP0DN37 164 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 TMEM11P17152 192 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 UBE2G2P60604 165 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 MIR17HGQ75NE6 70 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 OR10G8Q8NGN5 311 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 OR4X1Q8NH49 305 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 LINC01560Q8TB33 94 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 SMIM12Q96EX1 92 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 RAXQ9Y2V3 346 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 POLR3KQ9Y2Y1 108 aaPredicted RBP7.94□□□□□ -1.14
SS18-205ENST00000542420 TRBV9A0A0B4J1U6 114 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 SCO2A0A1W2PP80 73 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 A0A1W2PPI3 338 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 IGLC7A0M8Q6 106 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 PLAUP00749 431 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 CEACAM3P40198 252 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 PSG5Q15238 335 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 SPATA31B1PQ5VZV4 182 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 TMEM116Q8NCL8 245 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 OR10W1Q8NGF6 305 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 SIGLEC9Q9Y336 463 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 CHTOPQ9Y3Y2 248 aaKnown RBP7.94□□□□□ -1.14
SS18-205ENST00000542420 INSIG2Q9Y5U4 225 aa7.94□□□□□ -1.14
SS18-205ENST00000542420 TCF21O43680 179 aa7.93□□□□□ -1.14
SS18-205ENST00000542420 SLC25A17O43808 307 aa7.93□□□□□ -1.14
SS18-205ENST00000542420 DEFA4P12838 97 aa7.93□□□□□ -1.14
SS18-205ENST00000542420 COL8A2P25067 703 aa7.93□□□□□ -1.14
SS18-205ENST00000542420 EAF1Q96JC9 268 aaPredicted RBP7.93□□□□□ -1.14
SS18-205ENST00000542420 FAM167A-AS1Q96KT0 104 aa7.93□□□□□ -1.14
SS18-205ENST00000542420 OSTCQ9NRP0 149 aa7.93□□□□□ -1.14
SS18-205ENST00000542420 IL36BQ9NZH7 164 aa7.93□□□□□ -1.14
SS18-205ENST00000542420 ZFHX2Q9C0A1 2572 aaPredicted RBP7.93□□□□□ -1.14
SS18-205ENST00000542420 A0A1W2PPQ1 181 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 ACTL6BO94805 426 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 GOSR1O95249 250 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 REG1BP48304 166 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 YPEL3P61236 119 aaPredicted RBP7.92□□□□□ -1.14
SS18-205ENST00000542420 CLEC2AQ6UVW9 174 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 RPEQ96AT9 228 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 ZNF503Q96F45 646 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 GSX1Q9H4S2 264 aaPredicted RBP7.92□□□□□ -1.14
SS18-205ENST00000542420 ANKRD11Q6UB99 2663 aaPredicted RBP7.92□□□□□ -1.14
SS18-205ENST00000542420 IGKV1D-37A0A075B6S9 117 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 PRSS47A8MTI9 375 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 COX7A2P2O60397 106 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 DIAPH2-AS1Q14236 149 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 C10orf113Q5VZT2 155 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 PPP1R27Q86WC6 154 aa7.92□□□□□ -1.14
SS18-205ENST00000542420 PERPQ96FX8 193 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms