RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 TNFRSF9Q07011 255 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 SMCO1Q147U7 214 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 GAR1Q9NY12 217 aaKnown RBP11.3□□□□□ -0.6
UBE3B-212ENST00000540230 U3KQK5 164 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 IGHV3-49A0A0A0MS15 119 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 CORTO00230 105 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 NDUFB6O95139 128 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 HTR2BP41595 481 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 SRPXP78539 464 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 RELQ04864 619 aaPredicted RBP11.3□□□□□ -0.6
UBE3B-212ENST00000540230 DEFB125Q8N687 156 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 DUSP18Q8NEJ0 188 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 SLC24A4Q8NFF2 622 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 HSPB7Q9UBY9 170 aa11.3□□□□□ -0.6
UBE3B-212ENST00000540230 STAB2Q8WWQ8 2551 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 NAP1L6A6NFF2 107 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 C15orf62A8K5M9 175 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 K7EMT4 169 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 YIF1AO95070 293 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 TMEM50AO95807 157 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 NPBWR1P48145 328 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 C2orf83Q53S99 150 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 LRTM2Q8N967 370 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 OR10C1Q96KK4 312 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 RBKSQ9H477 322 aa11.29□□□□□ -0.6
UBE3B-212ENST00000540230 A0A1B0GU03 582 aa11.28□□□□□ -0.6
UBE3B-212ENST00000540230 PLA2G10O15496 165 aa11.28□□□□□ -0.6
UBE3B-212ENST00000540230 PITX3O75364 302 aa11.28□□□□□ -0.6
UBE3B-212ENST00000540230 NPY1RP25929 384 aa11.28□□□□□ -0.6
UBE3B-212ENST00000540230 TOMM20LQ6UXN7 152 aa11.28□□□□□ -0.6
UBE3B-212ENST00000540230 DTD1Q8TEA8 209 aa11.28□□□□□ -0.6
UBE3B-212ENST00000540230 ZFAND3Q9H8U3 227 aa11.28□□□□□ -0.6
UBE3B-212ENST00000540230 IGHV3OR16-13A0A075B7E8 117 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 IGHV3-74A0A0B4J1X5 117 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 DUXBA0A1W2PPF3 345 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 C9orf170A2RU37 121 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 A6NHS1 94 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 OR11H12B2RN74 326 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 CLN5O75503 358 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 HOXB5P09067 269 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 CNPY1Q3B7I2 92 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 LINC00322Q6ZN03 302 aaPredicted RBP11.27□□□□□ -0.61
UBE3B-212ENST00000540230 OR4X1Q8NH49 305 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 OR1S1Q8NH92 325 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 RCHY1Q96PM5 261 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 TM2D3Q9BRN9 247 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 TUBA4BQ9H853 241 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 SMPXQ9UHP9 88 aa11.27□□□□□ -0.61
UBE3B-212ENST00000540230 PUS1Q9Y606 427 aaKnown RBP eCLIP11.27□□□□□ -0.61
UBE3B-212ENST00000540230 TRAV25A0A0B4J276 109 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 IGHV7-4-1A0A0J9YVY3 117 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 RBMY1BA6NDE4 496 aaKnown RBP11.26□□□□□ -0.61
UBE3B-212ENST00000540230 RBMY1EA6NEQ0 496 aaKnown RBP11.26□□□□□ -0.61
UBE3B-212ENST00000540230 CHEK1O14757 476 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 IGKV1-17P01599 117 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 APOHP02749 345 aaPredicted RBP11.26□□□□□ -0.61
UBE3B-212ENST00000540230 RBMY1DP0C7P1 496 aaKnown RBP11.26□□□□□ -0.61
UBE3B-212ENST00000540230 ANXA7P20073 488 aaKnown RBP11.26□□□□□ -0.61
UBE3B-212ENST00000540230 HAGHQ16775 308 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 PRSS54Q6PEW0 395 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 ZNF600Q6ZNG1 722 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 RBPMS2Q6ZRY4 209 aaKnown RBP11.26□□□□□ -0.61
UBE3B-212ENST00000540230 OR52B4Q8NGK2 314 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 WWC2-AS2Q96NR7 200 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 RNF2Q99496 336 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 HIPK2Q9H2X6 1198 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 SRD5A3Q9H8P0 318 aa11.26□□□□□ -0.61
UBE3B-212ENST00000540230 KMT2CQ8NEZ4 4911 aaKnown RBP11.26□□□□□ -0.61
UBE3B-212ENST00000540230 MPTX1A8MV57 137 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 TSPAN4O14817 238 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 ADAP1O75689 374 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 RND2P52198 227 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 DHRS2Q13268 280 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 TIGITQ495A1 244 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 GGNBP1Q5YKI7 109 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 TMEM116Q8NCL8 245 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 RNASEH2CQ8TDP1 164 aaKnown RBP11.25□□□□□ -0.61
UBE3B-212ENST00000540230 CITED4Q96RK1 184 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 C7orf50Q9BRJ6 194 aaKnown RBP11.25□□□□□ -0.61
UBE3B-212ENST00000540230 RHPN1-AS1Q9BWJ2 59 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 TRAV14DV4A0A0A6YYC5 116 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 CENPXA8MT69 81 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 IFNA10P01566 189 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 OR4E1P0C645 316 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 IGLC1P0CG04 106 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 IAPPP10997 89 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 UBE2MP61081 183 aaKnown RBP11.25□□□□□ -0.61
UBE3B-212ENST00000540230 SLC16A13Q7RTY0 426 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 LILRB2Q8N423 598 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 SPAG8Q99932 426 aaPredicted RBP11.25□□□□□ -0.61
UBE3B-212ENST00000540230 UBQLN2Q9UHD9 624 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 TMED3Q9Y3Q3 217 aa11.25□□□□□ -0.61
UBE3B-212ENST00000540230 IGHV3-66A0A0C4DH42 116 aa11.24□□□□□ -0.61
UBE3B-212ENST00000540230 RPS10-NUDT3A0A1W2PQS6 291 aa11.24□□□□□ -0.61
UBE3B-212ENST00000540230 LYRM1O43325 122 aa11.24□□□□□ -0.61
UBE3B-212ENST00000540230 SLC25A6P12236 298 aa11.24□□□□□ -0.61
UBE3B-212ENST00000540230 LYG2Q86SG7 212 aa11.24□□□□□ -0.61
UBE3B-212ENST00000540230 ST8SIA2Q92186 375 aa11.24□□□□□ -0.61
UBE3B-212ENST00000540230 ZMAT4Q9H898 229 aa11.24□□□□□ -0.61
UBE3B-212ENST00000540230 RETNQ9HD89 108 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms