RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 FFAR4Q5NUL3 377 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 TREML4Q6UXN2 200 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 C1orf122Q6ZSJ8 110 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 RPP25LQ8N5L8 163 aaKnown RBP9.52□□□□□ -0.89
CLIP1-208ENST00000537004 BEND2Q8NDZ0 799 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 VSTM2AQ8TAG5 236 aa9.52□□□□□ -0.89
CLIP1-208ENST00000537004 VWFP04275 2813 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 MAP1LC3B2A6NCE7 125 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 BUB1B-PAK6H3BSN5 160 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 MPDU1O75352 247 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 MBP02144 154 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 COMPP49747 757 aaPredicted RBP9.51□□□□□ -0.89
CLIP1-208ENST00000537004 FGF8P55075 233 aaPredicted RBP9.51□□□□□ -0.89
CLIP1-208ENST00000537004 ZNF506Q5JVG8 444 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 OR10G4Q8NGN3 311 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 OR10G9Q8NGN4 311 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 OR10G7Q8NGN6 311 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 OR4A5Q8NH83 315 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 TMEM167AQ8TBQ9 72 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 COMMD5Q9GZQ3 224 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 MAP1LC3BQ9GZQ8 125 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 UNKLQ9H9P5 680 aaKnown RBP9.51□□□□□ -0.89
CLIP1-208ENST00000537004 IGHV3-72A0A0B4J1Y9 119 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 COLCA2A8K830 154 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 OR13C7P0DN81 318 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 UBE2E1P51965 193 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 SNRPEP62304 92 aaKnown RBP9.51□□□□□ -0.89
CLIP1-208ENST00000537004 ICAM4Q14773 271 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 RNF212Q495C1 297 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 C3orf56Q8N813 242 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 C15orf54Q8N8G6 183 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 OR4P4Q8NGL7 312 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 NIT2Q9NQR4 276 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 SLC39A9Q9NUM3 307 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 GNG13Q9P2W3 67 aa9.51□□□□□ -0.89
CLIP1-208ENST00000537004 C1orf196B1AJZ1 125 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 IER3P46695 156 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 HABP2Q14520 560 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-208ENST00000537004 VMA21Q3ZAQ7 101 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 ARSJQ5FYB0 599 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-208ENST00000537004 SLC16A13Q7RTY0 426 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 ZFP82Q8N141 532 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 OR10W1Q8NGF6 305 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 OR1L8Q8NGR8 309 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 SSMEM1Q8WWF3 244 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 AJUBAQ96IF1 538 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 RITA1Q96K30 269 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 SLC25A22Q9H936 323 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 NDUFA4L2Q9NRX3 87 aa9.5□□□□□ -0.89
CLIP1-208ENST00000537004 AMMECR1Q9Y4X0 333 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-208ENST00000537004 IGHV1-3A0A0C4DH29 117 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 CTXND1A0A1B0GTU2 59 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 LOC102723971A0A1B0GUV8 181 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 SLC25A17O43808 307 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 LGALS7P47929 136 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 KHDC3LQ587J8 217 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 MGST2Q99735 147 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 ZNF430Q9H8G1 570 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-208ENST00000537004 NPVFQ9HCQ7 196 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 SMCO4Q9NRQ5 59 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 ZFP92A6NM28 416 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 HSPB1P04792 205 aaKnown RBP9.49□□□□□ -0.89
CLIP1-208ENST00000537004 SRP19P09132 144 aaKnown RBP9.49□□□□□ -0.89
CLIP1-208ENST00000537004 FBP1P09467 338 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 BCL2P10415 239 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 OPRK1P41145 380 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 ATP5IP56385 69 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-208ENST00000537004 BSXQ3C1V8 233 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 ACOT6Q3I5F7 207 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-208ENST00000537004 SOHLH1Q5JUK2 328 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 LHFPL4Q7Z7J7 247 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 MOB3BQ86TA1 216 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 RPEQ96AT9 228 aa9.49□□□□□ -0.89
CLIP1-208ENST00000537004 METTL1Q9UBP6 276 aaKnown RBP9.49□□□□□ -0.89
CLIP1-208ENST00000537004 LSM4Q9Y4Z0 139 aaKnown RBP9.49□□□□□ -0.89
CLIP1-208ENST00000537004 E7EUB6 86 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 LY6LH3BQJ8 138 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 HMGB3O15347 200 aaKnown RBP9.48□□□□□ -0.89
CLIP1-208ENST00000537004 SOX15O60248 233 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 SSTP61278 116 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 FOXL1Q12952 345 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 C2orf83Q53S99 150 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 GGTLC1Q9BX51 225 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 ACTR3CQ9C0K3 210 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-208ENST00000537004 TPSG1Q9NRR2 321 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 FNDC10F2Z333 226 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 RNASE2P10153 161 aaKnown RBP9.48□□□□□ -0.89
CLIP1-208ENST00000537004 DEFA4P12838 97 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 C10orf55Q5SWW7 151 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 LDLRAD2Q5SZI1 272 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 TEPPQ6URK8 271 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 CYB561D1Q8N8Q1 229 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 OR11H6Q8NGC7 330 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 RAB24Q969Q5 203 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 C1RLQ9NZP8 487 aa9.48□□□□□ -0.89
CLIP1-208ENST00000537004 A0A1W2PN81 502 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 CGB1A6NKQ9 187 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 INS-IGF2F8WCM5 200 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 CYB5BO43169 146 aa9.47□□□□□ -0.89
CLIP1-208ENST00000537004 IFNA1P01562 189 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms