RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 YPEL2Q96QA6 119 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 HIST1H2BNQ99877 126 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 HIST1H2BMQ99879 126 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 M0R1W7 72 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 VDAC2P45880 294 aaPredicted RBP6.54□□□□□ -1.36
NEDD8-207ENST00000533242 LRRC10Q5BKY1 277 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 PRAMEF5Q5TYX0 476 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 CDPF1Q6NVV7 123 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 LYG1Q8N1E2 194 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 OR51G1Q8NGK1 321 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 ABHD5Q8WTS1 349 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 EDARADDQ8WWZ3 215 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 NPFFR1Q9GZQ6 430 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 MEGF9Q9H1U4 602 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 TMEM140Q9NV12 185 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 DOK5Q9P104 306 aa6.54□□□□□ -1.36
NEDD8-207ENST00000533242 CTXND1A0A1B0GTU2 59 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 PHOX2AO14813 284 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 PAGE4O60829 102 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 HPRT1P00492 218 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 RND2P52198 227 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 PRB3Q04118 309 aaPredicted RBP6.53□□□□□ -1.36
NEDD8-207ENST00000533242 LY6EQ16553 131 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 STUMQ69YW2 141 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 TCTEX1D1Q8N7M0 179 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 ZNF383Q8NA42 475 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 GAFA1Q96PS6 74 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 SMIM7Q9BQ49 75 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 ELOVL1Q9BW60 279 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 PARLQ9H300 379 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 WDR83OSQ9Y284 106 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 K7EIL1 84 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 CD28P10747 220 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 CD1BP29016 333 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 GNG10P50151 68 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 DLX1P56177 255 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 NDUFA6P56556 154 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 ADIRFQ15847 76 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 ATP6V1FQ16864 119 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 TRAT1Q6PIZ9 186 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 NECAP1Q8NC96 275 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 H1FXQ92522 213 aaKnown RBP6.53□□□□□ -1.36
NEDD8-207ENST00000533242 FRZBQ92765 325 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 WWC2-AS2Q96NR7 200 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 CIB3Q96Q77 187 aaPredicted RBP6.53□□□□□ -1.36
NEDD8-207ENST00000533242 P2RX4Q99571 388 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 DERL1Q9BUN8 251 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 GFOD1Q9NXC2 390 aa6.53□□□□□ -1.36
NEDD8-207ENST00000533242 NBEAL2Q6ZNJ1 2754 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 KBTBD11-OT1A0A1B0GTJ5 212 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 CXorf65A6NEN9 183 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 NKX6-3A6NJ46 265 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 ADARB2-AS1A8MUL3 147 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 IFNA10P01566 189 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 IGKV1-16P04430 117 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 ATP5G3P48201 142 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 RPL23P62829 140 aaKnown RBP6.52□□□□□ -1.37
NEDD8-207ENST00000533242 PMS2P11Q13670 270 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 PDZD11Q5EBL8 140 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 HCP5Q6MZN7 132 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 CYP2G1PQ6ZSU1 146 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 Q8N2B8 174 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 ZNF439Q8NDP4 499 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 AJUBAQ96IF1 538 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 S1PR3Q99500 378 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 MGST2Q99735 147 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 ZNF702PQ9H963 129 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 TCF19Q9Y242 345 aa6.52□□□□□ -1.37
NEDD8-207ENST00000533242 SMCO3A2RU48 225 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 SRRM4A7MD48 611 aaKnown RBP6.51□□□□□ -1.37
NEDD8-207ENST00000533242 LINC00587B1AMM8 73 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 SOX15O60248 233 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 KBTBD11O94819 623 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 SMIM6P0DI80 62 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 CD33P20138 364 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 HOXA5P20719 270 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 UBE2G2P60604 165 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 SPCS3P61009 180 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 PNRC1Q12796 327 aaPredicted RBP6.51□□□□□ -1.37
NEDD8-207ENST00000533242 ARSJQ5FYB0 599 aaPredicted RBP6.51□□□□□ -1.37
NEDD8-207ENST00000533242 MIC13Q5XKP0 118 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 OR4A47Q6IF82 309 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 C16orf82Q7Z2V1 217 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 MOB3BQ86TA1 216 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 WFDC9Q8NEX5 89 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 OR4A16Q8NH70 328 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 WIPF2Q8TF74 440 aaPredicted RBP6.51□□□□□ -1.37
NEDD8-207ENST00000533242 SDSLQ96GA7 329 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 FAM210BQ96KR6 192 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 RHOVQ96L33 236 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 HEYLQ9NQ87 328 aaPredicted RBP6.51□□□□□ -1.37
NEDD8-207ENST00000533242 NIT2Q9NQR4 276 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 SERTAD4Q9NUC0 356 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 PGPEP1LA6NFU8 196 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 B4DEV8 164 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 RBFOX2O43251 390 aaKnown RBP eCLIP6.51□□□□□ -1.37
NEDD8-207ENST00000533242 S100A8P05109 93 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 TRGC1P0CF51 173 aa6.51□□□□□ -1.37
NEDD8-207ENST00000533242 CDC34P49427 236 aaPredicted RBP6.51□□□□□ -1.37
NEDD8-207ENST00000533242 ZNF788Q6ZQV5 615 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms