RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 AKAIN1P0CW23 69 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 ERHP84090 104 aaKnown RBP8.32□□□□□ -1.08
VPS28-214ENST00000531032 TCF24Q7RTU0 167 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 TERB2Q8NHR7 220 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 MCFD2Q8NI22 146 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 MARCH1Q8TCQ1 289 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 ST8SIA2Q92186 375 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 PINX1Q96BK5 328 aaKnown RBP8.32□□□□□ -1.08
VPS28-214ENST00000531032 RRNAD1Q96FB5 475 aaKnown RBP8.32□□□□□ -1.08
VPS28-214ENST00000531032 TP53RKQ96S44 253 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 RARRES2Q99969 163 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 GINS3Q9BRX5 216 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 ENY2Q9NPA8 101 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 RSL24D1Q9UHA3 163 aaKnown RBP8.32□□□□□ -1.08
VPS28-214ENST00000531032 IGHV3OR16-13A0A075B7E8 117 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 IGHV3-74A0A0B4J1X5 117 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 TRAV2A0A0B4J234 112 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 CTDSPLO15194 276 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 B3GALNT1O75752 331 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 DFFBO76075 338 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 IFNA17P01571 189 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 P0C879 139 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 NPBWR1P48145 328 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 HOXA1P49639 335 aaPredicted RBP8.31□□□□□ -1.08
VPS28-214ENST00000531032 PAFAH1B2P68402 229 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 SPINK9Q5DT21 86 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 PVRIGQ6DKI7 326 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 TOMM20LQ6UXN7 152 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 LILRB2Q8N423 598 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 GBGT1Q8N5D6 347 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 OR4C16Q8NGL9 310 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 OR11H2Q8NH07 326 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 C11orf45Q8TAV5 145 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 PRRT1Q99946 306 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 MFFQ9GZY8 342 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 ZFAND3Q9H8U3 227 aa8.31□□□□□ -1.08
VPS28-214ENST00000531032 FABP12A6NFH5 140 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 DEDDO75618 318 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 CA1P00915 261 aaPredicted RBP8.3□□□□□ -1.08
VPS28-214ENST00000531032 IGKV1-5P01602 117 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 APOHP02749 345 aaPredicted RBP8.3□□□□□ -1.08
VPS28-214ENST00000531032 SNCAP37840 140 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 NANOS2P60321 138 aaKnown RBP8.3□□□□□ -1.08
VPS28-214ENST00000531032 SURF2Q15527 256 aaPredicted RBP8.3□□□□□ -1.08
VPS28-214ENST00000531032 IZUMO4Q1ZYL8 232 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 SP6Q3SY56 376 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 ZNF600Q6ZNG1 722 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 DUSP18Q8NEJ0 188 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 SLIRPQ9GZT3 109 aaKnown RBP8.3□□□□□ -1.08
VPS28-214ENST00000531032 MS4A6AQ9H2W1 248 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 MCUBQ9NWR8 336 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 SCP2D1Q9UJQ7 156 aa8.3□□□□□ -1.08
VPS28-214ENST00000531032 PUS1Q9Y606 427 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS28-214ENST00000531032 A0A0B4J293 547 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 A0A1B0GU03 582 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 CORTO00230 105 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 ST8SIA3O43173 380 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 TMEM50AO95807 157 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 OR5AC1P0C628 307 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 UCP1P25874 307 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 S100A5P33763 92 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 FAUP35544 74 aaKnown RBP8.29□□□□□ -1.08
VPS28-214ENST00000531032 DEFB131AP59861 70 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 TMEM187Q14656 261 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 RBMS2Q15434 407 aaKnown RBP8.29□□□□□ -1.08
VPS28-214ENST00000531032 LEMD1Q68G75 181 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 FAM24BQ8N5W8 94 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 OR51S1Q8NGJ8 323 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 NAA60Q9H7X0 242 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 FBXL17Q9UF56 701 aa8.29□□□□□ -1.08
VPS28-214ENST00000531032 IGHV3-66A0A0C4DH42 116 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 ANKRD20A5PA0PJZ0 165 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 DNASE2O00115 360 aaPredicted RBP8.28□□□□□ -1.08
VPS28-214ENST00000531032 GSTZ1O43708 216 aaPredicted RBP8.28□□□□□ -1.08
VPS28-214ENST00000531032 SCGB2A1O75556 95 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 IFNA4P05014 189 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 RNASE2P10153 161 aaKnown RBP8.28□□□□□ -1.08
VPS28-214ENST00000531032 SUB1P53999 127 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS28-214ENST00000531032 AP3S2P59780 193 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 DHODHQ02127 395 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 PYDC2Q56P42 97 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 FAM219AQ8IW50 185 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 RBPMSQ93062 196 aaKnown RBP8.28□□□□□ -1.08
VPS28-214ENST00000531032 SCGB3A2Q96PL1 93 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 TMEM231Q9H6L2 316 aa8.28□□□□□ -1.08
VPS28-214ENST00000531032 DEFB4AO15263 64 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 CLN5O75503 358 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 GIG44P09565 113 aaPredicted RBP8.27□□□□□ -1.09
VPS28-214ENST00000531032 TNFSF8P32971 234 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 TCTAP57738 103 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 RPL11P62913 178 aaKnown RBP8.27□□□□□ -1.09
VPS28-214ENST00000531032 BSXQ3C1V8 233 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 TMEM268Q5VZI3 342 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 Q8NAQ8 132 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 C2CD4CQ8TF44 421 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 TMEM222Q9H0R3 208 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 HRH4Q9H3N8 390 aa8.27□□□□□ -1.09
VPS28-214ENST00000531032 FNDC4Q9H6D8 234 aaPredicted RBP8.27□□□□□ -1.09
VPS28-214ENST00000531032 MRPL36Q9P0J6 103 aaKnown RBP8.27□□□□□ -1.09
VPS28-214ENST00000531032 A0A1W2PS18 150 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms