RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 LYRM7Q5U5X0 104 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 Q6AWC8 147 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 LCN8Q6JVE9 175 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 LCN15Q6UWW0 184 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 LYPD2Q6UXB3 125 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 Q6ZUT4 128 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 ATOH7Q8N100 152 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 KCNRGQ8N5I3 272 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 C3orf22Q8N5N4 141 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 LY6G5BQ8NDX9 201 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 OR4A5Q8NH83 315 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 OR5AK2Q8NH90 309 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 LMX1AQ8TE12 382 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 RTN4IP1Q8WWV3 396 aaPredicted RBP2.28□□□□□ -2.04
CD44-229ENST00000528672 CCL17Q92583 94 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BHQ93079 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 ELSPBP1Q96BH3 223 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 DPH3Q96FX2 82 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BNQ99877 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BMQ99879 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 PRSS27Q9BQR3 290 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 SPANXDQ9BXN6 97 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 OTORQ9NRC9 128 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 TMEM100Q9NV29 134 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 UQCR10Q9UDW1 63 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 RPUSD1Q9UJJ7 312 aaKnown RBP2.28□□□□□ -2.04
CD44-229ENST00000528672 FUT9Q9Y231 359 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 WASHC3Q9Y3C0 194 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 AMMECR1Q9Y4X0 333 aaPredicted RBP2.28□□□□□ -2.04
CD44-229ENST00000528672 ZNF106Q9H2Y7 1883 aaKnown RBP2.28□□□□□ -2.04
CD44-229ENST00000528672 KDM5CP41229 1560 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 EPRSP07814 1512 aaKnown RBP2.27□□□□□ -2.05
CD44-229ENST00000528672 CLASP1Q7Z460 1538 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 LRRC7Q96NW7 1537 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 IGLV3-10A0A075B6K4 115 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 IGHV3-74A0A0B4J1X5 117 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 IGHV3OR16-9A0A0B4J2B5 98 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 A0A0J9YXV3 536 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 WI2-2373I1.2A0A1W2PRP0 233 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 OR51F1A6NGY5 319 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 GABARAPH6UMI1 98 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 K7EP34 96 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 SRSF10O75494 262 aaKnown RBP2.27□□□□□ -2.05
CD44-229ENST00000528672 IGLV1-47P01700 117 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 MT-ATP8P03928 68 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 MMP7P09237 267 aaPredicted RBP2.27□□□□□ -2.05
CD44-229ENST00000528672 CTSEP14091 401 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 GFERP55789 205 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 RPS11P62280 158 aaKnown RBP eCLIP2.27□□□□□ -2.05
CD44-229ENST00000528672 GNB2P62879 340 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 PLGLB1Q02325 96 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 ORMDL2Q53FV1 153 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 CENPWQ5EE01 88 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 SPINK14Q6IE38 97 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 AMTNQ6UX39 209 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 UNQ9165/PRO28630Q6UXU0 137 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 SCGB1D4Q6XE38 83 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 SLC25A26Q70HW3 274 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 LRP11Q86VZ4 500 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 ZFP62Q8NB50 900 aaPredicted RBP2.27□□□□□ -2.05
CD44-229ENST00000528672 SLC25A40Q8TBP6 338 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 SPACA5Q96QH8 159 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 SLC25A21Q9BQT8 299 aaPredicted RBP2.27□□□□□ -2.05
CD44-229ENST00000528672 PXMP4Q9Y6I8 212 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 LRRIQ1Q96JM4 1722 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 ANKRD26Q9UPS8 1709 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 OBSCNQ5VST9 7968 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 PREX2Q70Z35 1606 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 DUOX2Q9NRD8 1548 aa2.27□□□□□ -2.05
CD44-229ENST00000528672 ATP10BO94823 1461 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 NEO1Q92859 1461 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 DCCP43146 1447 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 N4BP2Q86UW6 1770 aaPredicted RBP2.26□□□□□ -2.05
CD44-229ENST00000528672 IGLV11-55A0A075B6I3 123 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 IGHV2-26A0A0B4J1V2 119 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 A6NDX4 124 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 OR2T8A6NH00 312 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 ZNF727A8MUV8 499 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 TMEM262E9PQX1 116 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 F5H5P2 479 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 ISLRO14498 428 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 SOCS1O15524 211 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 YPEL1O60688 119 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 SS18L1O75177 396 aaPredicted RBP2.26□□□□□ -2.05
CD44-229ENST00000528672 LYZL6O75951 148 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 SIX6O95475 246 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 SEC11BP0C7V7 166 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 CRYGSP22914 178 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 DRD3P35462 400 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 SNCAP37840 140 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 UBE2AP49459 152 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 NDUFA8P51970 172 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 CRISP3P54108 245 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 SYNJ2BPP57105 145 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 MTPNP58546 118 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 FKBP1AP62942 108 aaKnown RBP2.26□□□□□ -2.05
CD44-229ENST00000528672 Q0VG73 95 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 PNOCQ13519 176 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 UBE2SQ16763 222 aa2.26□□□□□ -2.05
CD44-229ENST00000528672 RTL8BQ17RB0 113 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms