RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 NAP1L6A6NFF2 107 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 OR4C46A6NHA9 309 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 F8W735 103 aaPredicted RBP12.25□□□□□ -0.45
LSM1-205ENST00000523511 C3orf84H3BNL1 204 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 TSPAN4O14817 238 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 RNASE2P10153 161 aaKnown RBP12.25□□□□□ -0.45
LSM1-205ENST00000523511 EDN2P20800 178 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 ATP5IP56385 69 aaPredicted RBP12.25□□□□□ -0.45
LSM1-205ENST00000523511 SMCO1Q147U7 214 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 PVRIGQ6DKI7 326 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 ZNF600Q6ZNG1 722 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 DEFB125Q8N687 156 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 TMEM116Q8NCL8 245 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 LHFPL5Q8TAF8 219 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 RNASEH2CQ8TDP1 164 aaKnown RBP12.25□□□□□ -0.45
LSM1-205ENST00000523511 TRIM63Q969Q1 353 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 OR10C1Q96KK4 312 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 SMPXQ9UHP9 88 aa12.25□□□□□ -0.45
LSM1-205ENST00000523511 A0A1B0GU03 582 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 TMEM50AO95807 157 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 IGHV3-48P01763 117 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 SLC25A4P12235 298 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 VAMP1P23763 118 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 C2orf83Q53S99 150 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 OR4X1Q8NH49 305 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 SORL1Q92673 2214 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 TMEM230Q96A57 120 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 NARS2Q96I59 477 aaKnown RBP12.24□□□□□ -0.45
LSM1-205ENST00000523511 TMEM231Q9H6L2 316 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 SRD5A3Q9H8P0 318 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 U3KQ87 197 aa12.24□□□□□ -0.45
LSM1-205ENST00000523511 IGHV7-4-1A0A0J9YVY3 117 aa12.23□□□□□ -0.45
LSM1-205ENST00000523511 A0A1W2PS18 150 aa12.23□□□□□ -0.45
LSM1-205ENST00000523511 CLN5O75503 358 aa12.23□□□□□ -0.45
LSM1-205ENST00000523511 RBMS2Q15434 407 aaKnown RBP12.23□□□□□ -0.45
LSM1-205ENST00000523511 ZNF79Q15937 498 aa12.23□□□□□ -0.45
LSM1-205ENST00000523511 SLC24A4Q8NFF2 622 aa12.23□□□□□ -0.45
LSM1-205ENST00000523511 OR1S1Q8NH92 325 aa12.23□□□□□ -0.45
LSM1-205ENST00000523511 RHPN1-AS1Q9BWJ2 59 aa12.23□□□□□ -0.45
LSM1-205ENST00000523511 ZNF207O43670 478 aaKnown RBP12.22□□□□□ -0.45
LSM1-205ENST00000523511 IFNA10P01566 189 aa12.22□□□□□ -0.45
LSM1-205ENST00000523511 NPPCP23582 126 aa12.22□□□□□ -0.45
LSM1-205ENST00000523511 BSXQ3C1V8 233 aa12.22□□□□□ -0.45
LSM1-205ENST00000523511 NMSQ5H8A3 153 aa12.22□□□□□ -0.45
LSM1-205ENST00000523511 LYZL2Q7Z4W2 148 aa12.22□□□□□ -0.45
LSM1-205ENST00000523511 CENPSQ8N2Z9 138 aa12.22□□□□□ -0.45
LSM1-205ENST00000523511 PUS1Q9Y606 427 aaKnown RBP eCLIP12.22□□□□□ -0.45
LSM1-205ENST00000523511 IGHV3OR16-8A0A075B7F1 116 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 LOC102724200A0A096LPH7 203 aaPredicted RBP12.21□□□□□ -0.45
LSM1-205ENST00000523511 CHEK1O14757 476 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 NPY1RP25929 384 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 UBE2MP61081 183 aaKnown RBP12.21□□□□□ -0.45
LSM1-205ENST00000523511 SUPT4H1P63272 117 aaKnown RBP12.21□□□□□ -0.45
LSM1-205ENST00000523511 RPP30P78346 268 aaKnown RBP12.21□□□□□ -0.45
LSM1-205ENST00000523511 TNFRSF9Q07011 255 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 CNPY1Q3B7I2 92 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 TOMM20LQ6UXN7 152 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 LINC00322Q6ZN03 302 aaPredicted RBP12.21□□□□□ -0.45
LSM1-205ENST00000523511 DTD1Q8TEA8 209 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 Q8WTZ3 238 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 CITED4Q96RK1 184 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 SRRQ9GZT4 340 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 HSPB7Q9UBY9 170 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 TMED3Q9Y3Q3 217 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 SELENOKQ9Y6D0 94 aa12.21□□□□□ -0.45
LSM1-205ENST00000523511 MED6O75586 246 aa12.2□□□□□ -0.46
LSM1-205ENST00000523511 SLC25A6P12236 298 aa12.2□□□□□ -0.46
LSM1-205ENST00000523511 LRTM2Q8N967 370 aa12.2□□□□□ -0.46
LSM1-205ENST00000523511 METTL26Q96S19 204 aa12.2□□□□□ -0.46
LSM1-205ENST00000523511 FAM110AQ9BQ89 295 aa12.2□□□□□ -0.46
LSM1-205ENST00000523511 C7orf50Q9BRJ6 194 aaKnown RBP12.2□□□□□ -0.46
LSM1-205ENST00000523511 GGTLC1Q9BX51 225 aa12.2□□□□□ -0.46
LSM1-205ENST00000523511 SFT2D2O95562 160 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 IFNA4P05014 189 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 EIF2B2P49770 351 aaKnown RBP12.19□□□□□ -0.46
LSM1-205ENST00000523511 APOC4P55056 127 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 RAB11AP62491 216 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 RPL11P62913 178 aaKnown RBP12.19□□□□□ -0.46
LSM1-205ENST00000523511 OR1S2Q8NGQ3 325 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 IL17DQ8TAD2 202 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 MUC7Q8TAX7 377 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 GRAMD2BQ96HH9 432 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 RNF2Q99496 336 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 PFDN2Q9UHV9 154 aa12.19□□□□□ -0.46
LSM1-205ENST00000523511 RBMY1BA6NDE4 496 aaKnown RBP12.18□□□□□ -0.46
LSM1-205ENST00000523511 RBMY1EA6NEQ0 496 aaKnown RBP12.18□□□□□ -0.46
LSM1-205ENST00000523511 FAM90A26D6RGX4 464 aa12.18□□□□□ -0.46
LSM1-205ENST00000523511 DNASE2O00115 360 aaPredicted RBP12.18□□□□□ -0.46
LSM1-205ENST00000523511 RBMY1DP0C7P1 496 aaKnown RBP12.18□□□□□ -0.46
LSM1-205ENST00000523511 LYL1P12980 280 aa12.18□□□□□ -0.46
LSM1-205ENST00000523511 COQ8AQ8NI60 647 aa12.18□□□□□ -0.46
LSM1-205ENST00000523511 CIB3Q96Q77 187 aaPredicted RBP12.18□□□□□ -0.46
LSM1-205ENST00000523511 RBKSQ9H477 322 aa12.18□□□□□ -0.46
LSM1-205ENST00000523511 FNDC4Q9H6D8 234 aaPredicted RBP12.18□□□□□ -0.46
LSM1-205ENST00000523511 PRR13Q9NZ81 148 aa12.18□□□□□ -0.46
LSM1-205ENST00000523511 UBE2CO00762 179 aa12.17□□□□□ -0.46
LSM1-205ENST00000523511 NXPH3O95157 252 aa12.17□□□□□ -0.46
LSM1-205ENST00000523511 IFNA21P01568 189 aa12.17□□□□□ -0.46
LSM1-205ENST00000523511 YPEL3P61236 119 aaPredicted RBP12.17□□□□□ -0.46
LSM1-205ENST00000523511 BAK1Q16611 211 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms