RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CA1P00915 261 aaPredicted RBP10.54□□□□□ -0.72
USP53-209ENST00000514665 IGKV1D-33P01593 117 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 IGKV1-33P01594 117 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 DLX1P56177 255 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 HERVK_113P61574 105 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 TMEM136Q6ZRR5 245 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 FAM57AQ8TBR7 257 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 C1orf147Q96MC9 270 aaPredicted RBP10.54□□□□□ -0.72
USP53-209ENST00000514665 C18orf15Q96N68 181 aa10.54□□□□□ -0.72
USP53-209ENST00000514665 SSBP4Q9BWG4 385 aaPredicted RBP10.54□□□□□ -0.72
USP53-209ENST00000514665 F11RQ9Y624 299 aaKnown RBP10.54□□□□□ -0.72
USP53-209ENST00000514665 UBE2CO00762 179 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 PRR14LQ5THK1 2151 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 FREM1Q5H8C1 2179 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 HIGD1CA8MV81 97 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 TREML4Q6UXN2 200 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 TMEM170AQ8WVE7 144 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 ELOVL5Q9NYP7 299 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 AUP1Q9Y679 476 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 PTPN13Q12923 2485 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 GAGE10A6NGK3 116 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 SRRM5B3KS81 715 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 MEF2CQ06413 473 aaPredicted RBP10.53□□□□□ -0.72
USP53-209ENST00000514665 SRSF4Q08170 494 aaKnown RBP10.53□□□□□ -0.72
USP53-209ENST00000514665 LHFPL4Q7Z7J7 247 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 FAM90A1Q86YD7 464 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 HIST1H2BLQ99880 126 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 DERL1Q9BUN8 251 aa10.53□□□□□ -0.72
USP53-209ENST00000514665 COL25A1Q9BXS0 654 aaPredicted RBP10.53□□□□□ -0.72
USP53-209ENST00000514665 TMPRSS3P57727 454 aa10.52□□□□□ -0.72
USP53-209ENST00000514665 TCF24Q7RTU0 167 aa10.52□□□□□ -0.72
USP53-209ENST00000514665 TMEM70Q9BUB7 260 aa10.52□□□□□ -0.72
USP53-209ENST00000514665 MAP1LC3AQ9H492 121 aa10.52□□□□□ -0.72
USP53-209ENST00000514665 SONP18583 2426 aaKnown RBP10.52□□□□□ -0.73
USP53-209ENST00000514665 CIDEAO60543 219 aa10.52□□□□□ -0.73
USP53-209ENST00000514665 GGTLC1Q9BX51 225 aa10.52□□□□□ -0.73
USP53-209ENST00000514665 PHLDA3Q9Y5J5 127 aa10.52□□□□□ -0.73
USP53-209ENST00000514665 TRAV3A0A0B4J244 114 aa10.52□□□□□ -0.73
USP53-209ENST00000514665 K7ERU9 68 aa10.52□□□□□ -0.73
USP53-209ENST00000514665 ADMP35318 185 aa10.52□□□□□ -0.73
USP53-209ENST00000514665 KIR3DL3Q8N743 410 aa10.52□□□□□ -0.73
USP53-209ENST00000514665 BRCA2P51587 3418 aa10.52□□□□□ -0.73
USP53-209ENST00000514665 ANKHD1Q8IWZ3 2542 aaKnown RBP10.51□□□□□ -0.73
USP53-209ENST00000514665 M0R3E3 92 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 NPPCP23582 126 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 CD69Q07108 199 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 COTL1Q14019 142 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 TEX38Q6PEX7 206 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 GPR82Q96P67 336 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 A0A1B0GUT8 65 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 IGKV3-20P01619 116 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 SRSF6Q13247 344 aaKnown RBP10.51□□□□□ -0.73
USP53-209ENST00000514665 SPATA31B1PQ5VZV4 182 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 TEX45Q8NA69 505 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 DMRTA2Q96SC8 542 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 CHODLQ9H9P2 273 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 NRN1Q9NPD7 142 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 TRAV5A0A0B4J249 113 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 IGHV1-46P01743 117 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 MST1LQ2TV78 715 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 PRR31Q5SQ13 230 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 OR1N2Q8NGR9 330 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 PMCHL2Q9BQD1 86 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 C21orf62Q9NYP8 219 aa10.51□□□□□ -0.73
USP53-209ENST00000514665 TRBV24-1A0A075B6N3 115 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 C7orf71A4D174 169 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 LINC00473A8K010 186 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 MYOD1P15172 320 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 GPR183P32249 361 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 RNASEH2CQ8TDP1 164 aaKnown RBP10.5□□□□□ -0.73
USP53-209ENST00000514665 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.5□□□□□ -0.73
USP53-209ENST00000514665 NUDT3O95989 172 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 TAS2R60P59551 318 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 TMEM14EPQ6UXP3 125 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 Q9H3A6 140 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 FBXL7Q9UJT9 491 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 TRBV20OR9-2A0A075B6H5 130 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 CEACAM1P13688 526 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 ID1P41134 155 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 PSG9Q00887 426 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 CD177Q8N6Q3 437 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 LIME1Q9H400 295 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 SEPSECSQ9HD40 501 aaKnown RBP10.5□□□□□ -0.73
USP53-209ENST00000514665 LAMA3Q16787 3333 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 IGKV1-6A0A0C4DH72 117 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 TIMP3P35625 211 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 HIST3H2BBQ8N257 126 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 DYNLRB2Q8TF09 96 aa10.5□□□□□ -0.73
USP53-209ENST00000514665 RPUSD1Q9UJJ7 312 aaKnown RBP10.5□□□□□ -0.73
USP53-209ENST00000514665 APOHP02749 345 aaPredicted RBP10.49□□□□□ -0.73
USP53-209ENST00000514665 ATP5J2P56134 94 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 PRCDQ00LT1 54 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 SAPCD1Q5SSQ6 148 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 COQ2Q96H96 371 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 RPP21Q9H633 154 aaKnown RBP10.49□□□□□ -0.73
USP53-209ENST00000514665 TRAV1-1A0A0B4J248 108 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 LOC107984156A0A0G2JMH3 177 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 H3BVH4 76 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 GPX1P07203 203 aa10.49□□□□□ -0.73
USP53-209ENST00000514665 Q6P435 159 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms