RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 ACOT12Q8WYK0 555 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 RBMXL1Q96E39 390 aaKnown RBP2.65□□□□□ -1.99
NUP54-212ENST00000513248 OR4C12Q96R67 309 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 HSPB9Q9BQS6 159 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 FAM103A1Q9BTL3 118 aaKnown RBP2.65□□□□□ -1.99
NUP54-212ENST00000513248 YTHDF1Q9BYJ9 559 aaKnown RBP2.65□□□□□ -1.99
NUP54-212ENST00000513248 IFI27L2Q9H2X8 130 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 IFT46Q9NQC8 304 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 DIABLOQ9NR28 239 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 NDUFB11Q9NX14 153 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 ZNF230Q9UIE0 474 aaPredicted RBP2.65□□□□□ -1.99
NUP54-212ENST00000513248 VSIG4Q9Y279 399 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 MRPS7Q9Y2R9 242 aaKnown RBP2.65□□□□□ -1.99
NUP54-212ENST00000513248 PRELID3BQ9Y3B1 194 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 WNK2Q9Y3S1 2297 aa2.65□□□□□ -1.99
NUP54-212ENST00000513248 ZANQ9Y493 2812 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 TET2Q6N021 2002 aaPredicted RBP2.64□□□□□ -1.99
NUP54-212ENST00000513248 TRBV6-6A0A0A6YYG2 114 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 IGHV7-81A0A0B4J1V7 117 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 SMIM31A0A1B0GVY4 71 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 TMEM235A6NFC5 223 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 LINC01619G3V211 115 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 H0YJW9 148 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 ITGB1BP1O14713 200 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 OVOL1O14753 267 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 AIREO43918 545 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 RAMP3O60896 148 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 CRYZL1O95825 349 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 NAPSAO96009 420 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 IGHV3-11P01762 117 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 IGHG4P01861 327 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 HLA-DRB1P01911 266 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 CTXN2P0C2S0 81 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 APELAP0DMC3 54 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 CT45A6P0DMU7 189 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 CT45A5P0DMU8 189 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 CT45A7P0DMV0 189 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 RRASP10301 218 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 GALP22466 123 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 SDC2P34741 201 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 RAB9AP51151 201 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 FXYD4P59646 89 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 SSTP61278 116 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 CXCL6P80162 114 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 QRFPP83859 136 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 FXYD3Q14802 87 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 PSG5Q15238 335 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 TNXAQ16473 311 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 TATDN3Q17R31 274 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 ACTBL2Q562R1 376 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 OR2B11Q5JQS5 317 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 UBE2UQ5VVX9 321 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 PYHIN1Q6K0P9 492 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 SFXN4Q6P4A7 337 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 ZNF880Q6PDB4 577 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 ZNF773Q6PK81 442 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 LYPD6Q86Y78 171 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 PDPNQ86YL7 162 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 FAM71E2Q8N5Q1 922 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 TCTEX1D1Q8N7M0 179 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 LFNGQ8NES3 379 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 WFDC9Q8NEX5 89 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 NPBQ8NG41 125 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 OR5T1Q8NG75 326 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 LGALS14Q8TCE9 139 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 CASTOR1Q8WTX7 329 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 C4orf3Q8WVX3 66 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 TCTEX1D2Q8WW35 142 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 TMEM37Q8WXS4 190 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 ARPC1AQ92747 370 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 ZNF414Q96IQ9 312 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 ADTRPQ96IZ2 230 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 CYYR1Q96J86 154 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 RNF5Q99942 180 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 PAXXQ9BUH6 204 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 PARP12Q9H0J9 701 aaKnown RBP2.64□□□□□ -1.99
NUP54-212ENST00000513248 OR51E2Q9H255 320 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 PLSCR3Q9NRY6 295 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 TXNL4BQ9NX01 149 aaKnown RBP2.64□□□□□ -1.99
NUP54-212ENST00000513248 SDHAF2Q9NX18 166 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 RHBDL2Q9NX52 303 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 COA4Q9NYJ1 87 aa2.64□□□□□ -1.99
NUP54-212ENST00000513248 A0A087WXM4 84 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 TRBV6-7A0A0A0MS04 114 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 IGKV1-6A0A0C4DH72 117 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 A0A0G2JLM5 398 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 WI2-2373I1.2A0A1W2PRP0 233 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 MEIS3P1A6NDR6 274 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 FAM25AB3EWG3 89 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 FAM25CB3EWG5 89 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 FAM25GB3EWG6 89 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 MFNGO00587 321 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 FCN1O00602 326 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 CYB5BO43169 146 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 SLC22A5O76082 557 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 NDUFA3O95167 84 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 TNFAIP8O95379 198 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 IGKV1-16P04430 117 aa2.63□□□□□ -1.99
NUP54-212ENST00000513248 HSPB1P04792 205 aaKnown RBP2.63□□□□□ -1.99
NUP54-212ENST00000513248 IGF1P05019 195 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms