RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 EP300Q09472 2414 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 DIDO1Q9BTC0 2240 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 K7ERU9 68 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 CKS2P33552 79 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 COMPP49747 757 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 AP5S1Q9NUS5 200 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 EPDR1Q9UM22 224 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 ZNF257Q9Y2Q1 563 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 GAGE10A6NGK3 116 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 RPL24P83731 157 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 RNFT1Q5M7Z0 435 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 TMEM116Q8NCL8 245 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 TMUB1Q9BVT8 246 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 SNHG12Q9BXW3 62 aa6.93□□□□□ -1.3
LIMCH1-216ENST00000512820 TRAV9-2A0A087WT02 112 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 DLEU1O43261 78 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 NUDT3O95989 172 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 CX3CL1P78423 397 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 C2orf83Q53S99 150 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 CRIP3Q6Q6R5 217 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 ZNF114Q8NC26 417 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 ST6GALNAC3Q8NDV1 305 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 RPUSD1Q9UJJ7 312 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 ROS1P08922 2347 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 TCRBV4S1A1TA0A5B7 111 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 NUDT10Q8NFP7 164 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 NUDT11Q96G61 164 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 FMC1Q96HJ9 113 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 Q9H3A6 140 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 UTRNP46939 3433 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 FER1L5A0AVI2 2057 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 TDGF1P3P51864 188 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 C2orf16Q68DN1 1984 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 RBPMS2Q6ZRY4 209 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 OR4A5Q8NH83 315 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 PLSCR4Q9NRQ2 329 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 SOX21Q9Y651 276 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 GPX1P07203 203 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 CD59P13987 128 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 ZCCHC24Q8N2G6 241 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 MUC15Q8N387 334 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 SLC25A33Q9BSK2 321 aa6.92□□□□□ -1.3
LIMCH1-216ENST00000512820 PPIAL4CA0A0B4J2A2 164 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 PPIAL4GP0DN37 164 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 FOXC1Q12948 553 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 C10orf55Q5SWW7 151 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 TSKUQ8WUA8 353 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 FBXL15Q9H469 300 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 C11orf1Q9H5F2 150 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 A0A1B0GUT8 65 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 IL4P05112 153 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 ARF6P62330 175 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 CLEC7AQ9BXN2 247 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 COL25A1Q9BXS0 654 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 C17orf100A8MU93 164 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 IGKV3-15P01624 115 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 IGHV1-46P01743 117 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 C3orf79P0CE67 100 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 MLANAQ16655 118 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 NIT1Q86X76 327 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 RALYQ9UKM9 306 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 OR2T8A6NH00 312 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 F2RL2O00254 374 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 GOSR1O95249 250 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 APOHP02749 345 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 BMI1P35226 326 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 VDAC2P45880 294 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 LCN12Q6JVE5 192 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 TMEM136Q6ZRR5 245 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 CLEC5AQ9NY25 188 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 C1RLQ9NZP8 487 aa6.91□□□□□ -1.3
LIMCH1-216ENST00000512820 IGHV1-69-2A0A0G2JMI3 117 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 SNAI2O43623 268 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 CDKN1AP38936 164 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 MFAP4P55083 255 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 PRR31Q5SQ13 230 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 LHFPL4Q7Z7J7 247 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 CENPVQ7Z7K6 275 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 YPEL3P61236 119 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 Q0VG73 95 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 PYGO2Q9BRQ0 406 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 TMEM208Q9BTX3 173 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 SCRT1Q9BWW7 348 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 SLC25A15Q9Y619 301 aa6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 NCOA6Q14686 2063 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-216ENST00000512820 DNAH12Q6ZR08 3092 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 SMIM17P0DL12 118 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 Q6ZR03 302 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 ERASQ7Z444 233 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 PNKDQ8N490 385 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 GUCD1Q96NT3 240 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 DOCK11Q5JSL3 2073 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 DENND4AQ7Z401 1863 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 ECSCRQ19T08 205 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 CCDC144NLQ6NUI1 221 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 RAB37Q96AX2 223 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 C20orf144Q9BQM9 153 aa6.9□□□□□ -1.31
LIMCH1-216ENST00000512820 BSPH1Q075Z2 132 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 Q6ZWC4 215 aa6.89□□□□□ -1.31
LIMCH1-216ENST00000512820 TEX45Q8NA69 505 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms