RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 FAM110AQ9BQ89 295 aa12.33□□□□□ -0.44
DDX41-213ENST00000512027 HEYLQ9NQ87 328 aaPredicted RBP12.33□□□□□ -0.44
DDX41-213ENST00000512027 GAR1Q9NY12 217 aaKnown RBP12.33□□□□□ -0.44
DDX41-213ENST00000512027 UBQLN2Q9UHD9 624 aa12.33□□□□□ -0.44
DDX41-213ENST00000512027 C15orf62A8K5M9 175 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 K7EMT4 169 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 SULT1A3P0DMM9 295 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 SULT1A4P0DMN0 295 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 NPBWR1P48145 328 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 SUB1P53999 127 aaKnown RBP eCLIP12.32□□□□□ -0.44
DDX41-213ENST00000512027 NMSQ5H8A3 153 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 TMEM170AQ8WVE7 144 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 CITED4Q96RK1 184 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 SPATA25Q9BR10 227 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 SMPXQ9UHP9 88 aa12.32□□□□□ -0.44
DDX41-213ENST00000512027 RYR3Q15413 4870 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 TRAV25A0A0B4J276 109 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 A0A0B4J2A0 478 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 IGHV7-4-1A0A0J9YVY3 117 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 A0A1B0GU03 582 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 LINC00854A0A1B0GVQ3 168 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 TMEM50AO95807 157 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 CCR6P51684 374 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 ANKRD55Q3KP44 614 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 TOMM20LQ6UXN7 152 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 LGI3Q8N145 548 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 OR10C1Q96KK4 312 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 RNF2Q99496 336 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 SDHCQ99643 169 aaPredicted RBP12.31□□□□□ -0.44
DDX41-213ENST00000512027 RHPN1-AS1Q9BWJ2 59 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 ZFAND3Q9H8U3 227 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 SHPKQ9UHJ6 478 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 CSMD3Q7Z407 3707 aa12.31□□□□□ -0.44
DDX41-213ENST00000512027 IGKV3-7A0A075B6H7 116 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 CORTO00230 105 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 CHEK1O14757 476 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 TSPAN4O14817 238 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 APOHP02749 345 aaPredicted RBP12.3□□□□□ -0.44
DDX41-213ENST00000512027 ANXA3P12429 323 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 VAMP1P23763 118 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 HTR2BP41595 481 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 SMCO1Q147U7 214 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 TMEM116Q8NCL8 245 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 SLC24A4Q8NFF2 622 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 SPAG8Q99932 426 aaPredicted RBP12.3□□□□□ -0.44
DDX41-213ENST00000512027 HIPK2Q9H2X6 1198 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 RBKSQ9H477 322 aa12.3□□□□□ -0.44
DDX41-213ENST00000512027 PUS1Q9Y606 427 aaKnown RBP eCLIP12.3□□□□□ -0.44
DDX41-213ENST00000512027 STARD9Q9P2P6 4700 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 IGHV3-66A0A0C4DH42 116 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 CLN5O75503 358 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 TFPI2P48307 235 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 TNFRSF9Q07011 255 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 PPP1R1AQ13522 171 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 ODF3L2Q3SX64 289 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 TIGITQ495A1 244 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 C2orf83Q53S99 150 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 TMEM128Q5BJH2 165 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 TRIQKQ629K1 86 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 ZNF600Q6ZNG1 722 aa12.29□□□□□ -0.44
DDX41-213ENST00000512027 TRAV14DV4A0A0A6YYC5 116 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 NPY1RP25929 384 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 INPP1P49441 399 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 RND2P52198 227 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 SRPXP78539 464 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 LAMTOR1Q6IAA8 161 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 LILRB2Q8N423 598 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 OR4X1Q8NH49 305 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 OR1S1Q8NH92 325 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 MUC7Q8TAX7 377 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 DTD1Q8TEA8 209 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 ST8SIA2Q92186 375 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 SLC25A21Q9BQT8 299 aaPredicted RBP12.28□□□□□ -0.44
DDX41-213ENST00000512027 HSPB7Q9UBY9 170 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 FLVCR2Q9UPI3 526 aa12.28□□□□□ -0.44
DDX41-213ENST00000512027 PRSS54Q6PEW0 395 aa12.27□□□□□ -0.45
DDX41-213ENST00000512027 CENPSQ8N2Z9 138 aa12.27□□□□□ -0.45
DDX41-213ENST00000512027 GBGT1Q8N5D6 347 aa12.27□□□□□ -0.45
DDX41-213ENST00000512027 EDA2RQ9HAV5 297 aa12.27□□□□□ -0.45
DDX41-213ENST00000512027 DYNC2H1Q8NCM8 4307 aaKnown RBP12.26□□□□□ -0.45
DDX41-213ENST00000512027 SFT2D2O95562 160 aa12.26□□□□□ -0.45
DDX41-213ENST00000512027 IFNA10P01566 189 aa12.26□□□□□ -0.45
DDX41-213ENST00000512027 IGKV1-17P01599 117 aa12.26□□□□□ -0.45
DDX41-213ENST00000512027 RBMS2Q15434 407 aaKnown RBP12.26□□□□□ -0.45
DDX41-213ENST00000512027 ZNF124Q15973 351 aa12.26□□□□□ -0.45
DDX41-213ENST00000512027 DEDD2Q8WXF8 326 aa12.26□□□□□ -0.45
DDX41-213ENST00000512027 GINS3Q9BRX5 216 aa12.26□□□□□ -0.45
DDX41-213ENST00000512027 RPS10-NUDT3A0A1W2PQS6 291 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 OR4C46A6NHA9 309 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 HOXB5P09067 269 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 IGLC1P0CG04 106 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 IAPPP10997 89 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 IL7P13232 177 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 BTCP35070 178 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 FAM90A2PQ658T7 463 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 TCF24Q7RTU0 167 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 APRG1Q8IVJ8 170 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 LRTM2Q8N967 370 aa12.25□□□□□ -0.45
DDX41-213ENST00000512027 RNASEH2CQ8TDP1 164 aaKnown RBP12.25□□□□□ -0.45
DDX41-213ENST00000512027 ACY3Q96HD9 319 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms