RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 C16orf82Q7Z2V1 217 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 FOXRED2Q8IWF2 684 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 CMTM1Q8IZ96 169 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 OR4P4Q8NGL7 312 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 GPER1Q99527 375 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 TXNDC17Q9BRA2 123 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 KRTAP4-2Q9BYR5 136 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 SERTAD4Q9NUC0 356 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 NECAP2Q9NVZ3 263 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 IL36GQ9NZH8 169 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 HSF4Q9ULV5 492 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 MRPS28Q9Y2Q9 187 aaKnown RBP6.42□□□□□ -1.38
SCN1A-207ENST00000507401 SIGLEC9Q9Y336 463 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 LSM5Q9Y4Y9 91 aaKnown RBP6.42□□□□□ -1.38
SCN1A-207ENST00000507401 NOTCH1P46531 2555 aa6.42□□□□□ -1.38
SCN1A-207ENST00000507401 TRAV24A0A0B4J272 114 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 LY6LH3BQJ8 138 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 BUB1B-PAK6H3BSN5 160 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 F2RL2O00254 374 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 SCGB1D1O95968 90 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 HPRT1P00492 218 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 IL6RP08887 468 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-207ENST00000507401 SNRPCP09234 159 aaKnown RBP6.41□□□□□ -1.38
SCN1A-207ENST00000507401 GZMHP20718 246 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 PPP1CCP36873 323 aaKnown RBP6.41□□□□□ -1.38
SCN1A-207ENST00000507401 GNG10P50151 68 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 CNN1P51911 297 aaKnown RBP6.41□□□□□ -1.38
SCN1A-207ENST00000507401 TPPP2P59282 170 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 TMEM187Q14656 261 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 SRSF7Q16629 238 aaKnown RBP eCLIP6.41□□□□□ -1.38
SCN1A-207ENST00000507401 C17orf58Q2M2W7 97 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 GFI1BQ5VTD9 330 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 CCDC144NLQ6NUI1 221 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 ZNF66Q6ZN08 573 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 LINC00596Q86U02 117 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 KLHDC1Q8N7A1 406 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 OR4D5Q8NGN0 318 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 OR9G1Q8NH87 305 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 WIPF2Q8TF74 440 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-207ENST00000507401 COQ2Q96H96 371 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 ATP5SQ99766 215 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 KRTAP4-9Q9BYQ8 210 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 RBKSQ9H477 322 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 ZNF702PQ9H963 129 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 MANBALQ9NQG1 85 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 HILPDAQ9Y5L2 63 aa6.41□□□□□ -1.38
SCN1A-207ENST00000507401 TET2Q6N021 2002 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-207ENST00000507401 TRBV9A0A0B4J1U6 114 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 FOXI3A8MTJ6 420 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-207ENST00000507401 NPIPB11E5RHQ5 1161 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 F6UZH7 168 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 KBTBD11O94819 623 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 S100GP29377 79 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 BLCAPP62952 87 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 HLA-DRB5Q30154 266 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 BSXQ3C1V8 233 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 MORN2Q502X0 79 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 PDLIM3Q53GG5 364 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-207ENST00000507401 PDZD11Q5EBL8 140 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 PRAMEF5Q5TYX0 476 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 FAM90A2PQ658T7 463 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 ZNF343Q6P1L6 599 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 GLIPR1L1Q6UWM5 242 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 OSR2Q8N2R0 312 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 OR51G1Q8NGK1 321 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 OR2T10Q8NGZ9 312 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 OR5B3Q8NH48 314 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 SLC35E1Q96K37 410 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 Q96M66 194 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 MS4A10Q96PG2 267 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 NKX3-1Q99801 234 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-207ENST00000507401 C11orf1Q9H5F2 150 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 ST3GAL6Q9Y274 331 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 TIMM9Q9Y5J7 89 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 URGCP-MRPS24S4R325 110 aa6.4□□□□□ -1.38
SCN1A-207ENST00000507401 ZNF727A8MUV8 499 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 H3BS24 57 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 J3QR06 171 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 MPIG6BO95866 241 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 TOMM40O96008 361 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 REG1AP05451 166 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 FAM106CPP0CH98 169 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 NKX2-1P43699 371 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-207ENST00000507401 GALR1P47211 349 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 UBE2G2P60604 165 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 RAB11AP62491 216 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 ATP6V1FQ16864 119 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM41BQ5BJD5 291 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 TPTE2P1Q5T6R2 138 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM219Q86XT9 240 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 FAM110DQ8TAY7 271 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-207ENST00000507401 SCGB1C1Q8TD33 95 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 RTN4IP1Q8WWV3 396 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-207ENST00000507401 TMEM56Q96MV1 263 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 RAB40CQ96S21 281 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 RARRES2Q99969 163 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 NICN1Q9BSH3 213 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 VAMP8Q9BV40 100 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 SMIM3Q9BZL3 60 aa6.39□□□□□ -1.39
SCN1A-207ENST00000507401 MAGT1Q9H0U3 335 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms