RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 A0A0D9SG52 128 aa13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 SCAF4O95104 1147 aaKnown RBP13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 TRGV3P03979 118 aa13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 RPL12P30050 165 aaKnown RBP13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 SSBP2P81877 361 aaPredicted RBP13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 BAXQ07812 192 aa13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 SRSF12Q8WXF0 261 aaKnown RBP13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 HINT2Q9BX68 163 aa13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 PSENENQ9NZ42 101 aa13.88□□□□□ -0.19
SQSTM1-209ENST00000504627 MSGN1A6NI15 193 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 HSPB1P04792 205 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 NHLRC4P0CG21 123 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 CXCL2P19875 107 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 C4BPBP20851 252 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 RPP30P78346 268 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 LAMTOR1Q6IAA8 161 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 STX12Q86Y82 276 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 KCNRGQ8N5I3 272 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 TMEM252Q8N6L7 170 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 OR5T1Q8NG75 326 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 HEYLQ9NQ87 328 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 HSPB11Q9Y547 144 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 U3KQ87 197 aa13.87□□□□□ -0.19
SQSTM1-209ENST00000504627 CGB1A6NKQ9 187 aa13.86□□□□□ -0.19
SQSTM1-209ENST00000504627 H3BP45 60 aa13.86□□□□□ -0.19
SQSTM1-209ENST00000504627 ATP5IP56385 69 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-209ENST00000504627 EWSR1Q01844 656 aaKnown RBP eCLIP13.86□□□□□ -0.193e-8■■■□□ 18.8
SQSTM1-209ENST00000504627 LGALSLQ3ZCW2 172 aaPredicted RBP13.86□□□□□ -0.19
SQSTM1-209ENST00000504627 TMEM14EPQ6UXP3 125 aa13.86□□□□□ -0.19
SQSTM1-209ENST00000504627 SLC24A4Q8NFF2 622 aa13.86□□□□□ -0.19
SQSTM1-209ENST00000504627 ZC4H2Q9NQZ6 224 aa13.86□□□□□ -0.19
SQSTM1-209ENST00000504627 STRAPQ9Y3F4 350 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-209ENST00000504627 A0A0G2JLM5 398 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 A0A1B0GW64 132 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 IGLC7A0M8Q6 106 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 IGSF23A1L1A6 192 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 FAM24AA6NFZ4 105 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 TEX22C9J3V5 150 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 E7EUB6 86 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 H3BUA1 57 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 HTR2BP41595 481 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 ERHP84090 104 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 BSXQ3C1V8 233 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 SPANXN5Q5MJ07 72 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 ZNF114Q8NC26 417 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 TMEM68Q96MH6 324 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 WWC2-AS2Q96NR7 200 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 OR4C12Q96R67 309 aa13.85□□□□□ -0.19
SQSTM1-209ENST00000504627 C15orf62A8K5M9 175 aa13.84□□□□□ -0.19
SQSTM1-209ENST00000504627 NPY1RP25929 384 aa13.84□□□□□ -0.19
SQSTM1-209ENST00000504627 S100A11P31949 105 aa13.84□□□□□ -0.19
SQSTM1-209ENST00000504627 SULT1A1P50225 295 aa13.84□□□□□ -0.19
SQSTM1-209ENST00000504627 AP2S1P53680 142 aaPredicted RBP13.84□□□□□ -0.19
SQSTM1-209ENST00000504627 ACSM6Q6P461 480 aa13.84□□□□□ -0.19
SQSTM1-209ENST00000504627 TMUB2Q71RG4 321 aa13.84□□□□□ -0.19
SQSTM1-209ENST00000504627 ARL6Q9H0F7 186 aa13.84□□□□□ -0.19
SQSTM1-209ENST00000504627 SMAD5-AS1Q9Y6J3 95 aa13.84□□□□□ -0.19
SQSTM1-209ENST00000504627 KANTRA0A1W2PQU2 76 aa13.83□□□□□ -0.2
SQSTM1-209ENST00000504627 BCL2L11O43521 198 aa13.83□□□□□ -0.2
SQSTM1-209ENST00000504627 IFNA10P01566 189 aa13.83□□□□□ -0.2
SQSTM1-209ENST00000504627 WT1-ASQ06250 92 aa13.83□□□□□ -0.2
SQSTM1-209ENST00000504627 OR10W1Q8NGF6 305 aa13.83□□□□□ -0.2
SQSTM1-209ENST00000504627 ASCL2Q99929 193 aa13.83□□□□□ -0.2
SQSTM1-209ENST00000504627 ELOVL1Q9BW60 279 aa13.83□□□□□ -0.2
SQSTM1-209ENST00000504627 SORL1Q92673 2214 aa13.83□□□□□ -0.2
SQSTM1-209ENST00000504627 TAAR5O14804 337 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 METTL15P1P0C7V9 234 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 OR13C7P0DN81 318 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 RNASE2P10153 161 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 SNCAP37840 140 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 RAB11AP62491 216 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 HBG1P69891 147 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 HBG2P69892 147 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 C2orf83Q53S99 150 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 ARPC5LQ9BPX5 153 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 FBXL17Q9UF56 701 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 U3KQK5 164 aa13.82□□□□□ -0.2
SQSTM1-209ENST00000504627 ANKRD34BA5PLL1 514 aa13.81□□□□□ -0.2
SQSTM1-209ENST00000504627 APELAP0DMC3 54 aa13.81□□□□□ -0.2
SQSTM1-209ENST00000504627 ZP3P21754 424 aa13.81□□□□□ -0.2
SQSTM1-209ENST00000504627 SUB1P53999 127 aaKnown RBP eCLIP13.81□□□□□ -0.2
SQSTM1-209ENST00000504627 PINX1Q96BK5 328 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-209ENST00000504627 PMS2P5A8MQ11 134 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 NPIPB5A8MRT5 1133 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 CST7O76096 145 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 GP9P14770 177 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 AREGP15514 252 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 OPCMLQ14982 345 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 HAPLN4Q86UW8 402 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 OR1S2Q8NGQ3 325 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 TMEM170AQ8WVE7 144 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 PAIP2BQ9ULR5 123 aaKnown RBP13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 BOLA1Q9Y3E2 137 aa13.8□□□□□ -0.2
SQSTM1-209ENST00000504627 DFFBO76075 338 aa13.79□□□□□ -0.2
SQSTM1-209ENST00000504627 DEFA5Q01523 94 aa13.79□□□□□ -0.2
SQSTM1-209ENST00000504627 NHLH2Q02577 135 aa13.79□□□□□ -0.2
SQSTM1-209ENST00000504627 PVRIGQ6DKI7 326 aa13.79□□□□□ -0.2
SQSTM1-209ENST00000504627 TMEM217Q8N7C4 229 aa13.79□□□□□ -0.2
SQSTM1-209ENST00000504627 OR10P1Q8NGE3 313 aa13.79□□□□□ -0.2
SQSTM1-209ENST00000504627 OR1L6Q8NGR2 347 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms