RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 LAMTOR1Q6IAA8 161 aa10.67□□□□□ -0.7
HOXC9-202ENST00000504557 TMEM116Q8NCL8 245 aa10.67□□□□□ -0.7
HOXC9-202ENST00000504557 FNDC4Q9H6D8 234 aaPredicted RBP10.67□□□□□ -0.7
HOXC9-202ENST00000504557 MRPL36Q9P0J6 103 aaKnown RBP10.67□□□□□ -0.7
HOXC9-202ENST00000504557 TRAV14DV4A0A0A6YYC5 116 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 TRAV25A0A0B4J276 109 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 IGHV7-4-1A0A0J9YVY3 117 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 C15orf62A8K5M9 175 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 ZNF701M0R085 212 aaPredicted RBP10.66□□□□□ -0.7
HOXC9-202ENST00000504557 TRIQKQ629K1 86 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 TOMM20LQ6UXN7 152 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 LGI3Q8N145 548 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 GBGT1Q8N5D6 347 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 OR1S1Q8NH92 325 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 GALNT14Q96FL9 552 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 ZNF414Q96IQ9 312 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 RNF2Q99496 336 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 RHPN1-AS1Q9BWJ2 59 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 SRRQ9GZT4 340 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 SMPXQ9UHP9 88 aa10.66□□□□□ -0.7
HOXC9-202ENST00000504557 PUS1Q9Y606 427 aaKnown RBP eCLIP10.66□□□□□ -0.7
HOXC9-202ENST00000504557 INS-IGF2F8WCM5 200 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 K7EMT4 169 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 CHEK1O14757 476 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 TMEM50AO95807 157 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 IFNA10P01566 189 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 HTR2BP41595 481 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 CCR6P51684 374 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 SMCO1Q147U7 214 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 TIGITQ495A1 244 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 ZNF600Q6ZNG1 722 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 SLC24A4Q8NFF2 622 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 OR52E5Q8NH55 327 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 MUC7Q8TAX7 377 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 IL22RA2Q969J5 263 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 SPAG8Q99932 426 aaPredicted RBP10.65□□□□□ -0.7
HOXC9-202ENST00000504557 HIPK2Q9H2X6 1198 aa10.65□□□□□ -0.7
HOXC9-202ENST00000504557 A0A0B4J2A0 478 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 A0A1B0GU03 582 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 TSPAN4O14817 238 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 APOHP02749 345 aaPredicted RBP10.64□□□□□ -0.71
HOXC9-202ENST00000504557 FCGR2BP31994 310 aaPredicted RBP10.64□□□□□ -0.71
HOXC9-202ENST00000504557 RND2P52198 227 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 RPL11P62913 178 aaKnown RBP10.64□□□□□ -0.71
HOXC9-202ENST00000504557 SRPXP78539 464 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 BAK1Q16611 211 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 ZFAND6Q6FIF0 208 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 WFDC3Q8IUB2 231 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 GINS3Q9BRX5 216 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 RBKSQ9H477 322 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 SHPKQ9UHJ6 478 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 NBEAL2Q6ZNJ1 2754 aa10.64□□□□□ -0.71
HOXC9-202ENST00000504557 RPS10-NUDT3A0A1W2PQS6 291 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 OR4C46A6NHA9 309 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 CLN5O75503 358 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 NPY1RP25929 384 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 TNFRSF9Q07011 255 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 PPP1R1AQ13522 171 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 BSXQ3C1V8 233 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 AARDQ4LEZ3 155 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 TMEM128Q5BJH2 165 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 NMSQ5H8A3 153 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 LINC00322Q6ZN03 302 aaPredicted RBP10.63□□□□□ -0.71
HOXC9-202ENST00000504557 CENPSQ8N2Z9 138 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 DTD1Q8TEA8 209 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 ST8SIA2Q92186 375 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 ACY3Q96HD9 319 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 OR10C1Q96KK4 312 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 CITED4Q96RK1 184 aa10.63□□□□□ -0.71
HOXC9-202ENST00000504557 PAIP2BQ9ULR5 123 aaKnown RBP10.63□□□□□ -0.71
HOXC9-202ENST00000504557 LOC102724200A0A096LPH7 203 aaPredicted RBP10.62□□□□□ -0.71
HOXC9-202ENST00000504557 SCGB2A1O75556 95 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 HOXB5P09067 269 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 IAPPP10997 89 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 LYL1P12980 280 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 RPL35AP18077 110 aaKnown RBP10.62□□□□□ -0.71
HOXC9-202ENST00000504557 ZNF124Q15973 351 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 ODF3L2Q3SX64 289 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 C2orf83Q53S99 150 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 PVRIGQ6DKI7 326 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 TCF24Q7RTU0 167 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 APRG1Q8IVJ8 170 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 OR4X1Q8NH49 305 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 TMEM170AQ8WVE7 144 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 SLC25A21Q9BQT8 299 aaPredicted RBP10.62□□□□□ -0.71
HOXC9-202ENST00000504557 GGTLC1Q9BX51 225 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 ZFAND3Q9H8U3 227 aa10.62□□□□□ -0.71
HOXC9-202ENST00000504557 C3orf84H3BNL1 204 aa10.61□□□□□ -0.71
HOXC9-202ENST00000504557 SFT2D2O95562 160 aa10.61□□□□□ -0.71
HOXC9-202ENST00000504557 IFNA4P05014 189 aa10.61□□□□□ -0.71
HOXC9-202ENST00000504557 RBMS2Q15434 407 aaKnown RBP10.61□□□□□ -0.71
HOXC9-202ENST00000504557 PRSS54Q6PEW0 395 aa10.61□□□□□ -0.71
HOXC9-202ENST00000504557 LILRB2Q8N423 598 aa10.61□□□□□ -0.71
HOXC9-202ENST00000504557 HSPB7Q9UBY9 170 aa10.61□□□□□ -0.71
HOXC9-202ENST00000504557 FLVCR2Q9UPI3 526 aa10.61□□□□□ -0.71
HOXC9-202ENST00000504557 DNASE2O00115 360 aaPredicted RBP10.6□□□□□ -0.71
HOXC9-202ENST00000504557 DFFBO76075 338 aa10.6□□□□□ -0.71
HOXC9-202ENST00000504557 NPPCP23582 126 aa10.6□□□□□ -0.71
HOXC9-202ENST00000504557 OR10J1P30954 320 aa10.6□□□□□ -0.71
HOXC9-202ENST00000504557 BMI1P35226 326 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms