RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 H0YJW9 148 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 TDGF1P13385 188 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 TMEM167AQ8TBQ9 72 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 LY96Q9Y6Y9 160 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 TMEM50AO95807 157 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 IGHV1-8P0DP01 117 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 DLX6P56179 175 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 A0A1B0GW15 77 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 ATXN7O15265 892 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 IGKV1-39P01597 117 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 IGKV1D-39P04432 117 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 GATA4P43694 442 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 IGFL3Q6UXB1 125 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 TCF23Q7RTU1 214 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 C21orf62Q9NYP8 219 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 EPDR1Q9UM22 224 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 PGPEP1LA6NFU8 196 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 SIAH2O43255 324 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 Q6ZR03 302 aa8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 TBL2Q9Y4P3 447 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-205ENST00000503057 J3KRW8 73 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 IGLV1-44P01699 117 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 SPATA31B1PQ5VZV4 182 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 SEPSECSQ9HD40 501 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 SVILO95425 2214 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 IGHV2-26A0A0B4J1V2 119 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 TNFSF13O75888 250 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 ANOS1P23352 680 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 Q6AWC8 147 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 ZNF738Q8NE65 137 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 OR10AG1Q8NH19 301 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 HIST1H2BLQ99880 126 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 A6NDN8 102 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 LINC00587B1AMM8 73 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 LINC00205P59089 165 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 RBPMS2Q6ZRY4 209 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 LYPD6BQ8NI32 183 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 Q8TCH9 128 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 PYYP10082 97 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 ACTL10Q5JWF8 245 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 NEU1Q99519 415 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 MAP1LC3AQ9H492 121 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 PTPRZ1P23471 2315 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 CACNA1EQ15878 2313 aa8.84□□□□□ -0.99
LIMCH1-205ENST00000503057 DPRXA6NFQ7 191 aa8.84□□□□□ -1
LIMCH1-205ENST00000503057 FBLL1A6NHQ2 334 aaKnown RBP8.84□□□□□ -1
LIMCH1-205ENST00000503057 AREGP15514 252 aa8.84□□□□□ -1
LIMCH1-205ENST00000503057 NPPCP23582 126 aa8.84□□□□□ -1
LIMCH1-205ENST00000503057 OR10J3Q5JRS4 329 aa8.84□□□□□ -1
LIMCH1-205ENST00000503057 FBXL7Q9UJT9 491 aa8.84□□□□□ -1
LIMCH1-205ENST00000503057 MGPP08493 103 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 GTF2H5Q6ZYL4 71 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 C8orf46Q8TAG6 207 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 HIGD1CA8MV81 97 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 SERF1AO75920 110 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 JOSD1Q15040 202 aaPredicted RBP8.83□□□□□ -1
LIMCH1-205ENST00000503057 RNF5Q99942 180 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 RP1L1Q8IWN7 2480 aaPredicted RBP8.83□□□□□ -1
LIMCH1-205ENST00000503057 CBY3A6NI87 242 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 GNG5P63218 68 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 CX3CL1P78423 397 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 PRSS8Q16651 343 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 CIARTQ8N365 385 aaPredicted RBP8.83□□□□□ -1
LIMCH1-205ENST00000503057 PF4V1P10720 104 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 SLX1AQ9BQ83 275 aa8.83□□□□□ -1
LIMCH1-205ENST00000503057 SOD3P08294 240 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 ADIPOQQ15848 244 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 DPF1Q92782 380 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 IGKV3-7A0A075B6H7 116 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 A0A1B0GUT8 65 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 THBDP07204 575 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 LYRM7Q5U5X0 104 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 TCF24Q7RTU0 167 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 CCL19Q99731 98 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 TMEM70Q9BUB7 260 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 DERL1Q9BUN8 251 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 TRGV9Q99603 122 aa8.82□□□□□ -1
LIMCH1-205ENST00000503057 HERVK_113P61574 105 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 RNF125Q96EQ8 232 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 TMEM14BQ9NUH8 114 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 NUP210LQ5VU65 1888 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 IGHV1-3A0A0C4DH29 117 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 C15orf65H3BRN8 121 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 IGHV3-23P01764 117 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 WNT2P09544 360 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 CFHR2P36980 270 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 GFI1BQ5VTD9 330 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 C12orf54Q6X4T0 127 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 TRAV5A0A0B4J249 113 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 LYNX1G3V0Z9 82 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 TIMM23O14925 209 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 LYNX1P0DP58 116 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 ZNF672Q499Z4 452 aaPredicted RBP8.81□□□□□ -1
LIMCH1-205ENST00000503057 DNAJC13O75165 2243 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 ZNF726P1Q15940 193 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 SLC25A34Q6PIV7 304 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 ATP5L2Q7Z4Y8 100 aa8.81□□□□□ -1
LIMCH1-205ENST00000503057 FGF23Q9GZV9 251 aaPredicted RBP8.81□□□□□ -1
LIMCH1-205ENST00000503057 AMBPP02760 352 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms