RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 NIT1Q86X76 327 aa13.35□□□□□ -0.27
COL6A1-206ENST00000498614 FAM19A2Q8N3H0 131 aa13.35□□□□□ -0.27
COL6A1-206ENST00000498614 C11orf42Q8N5U0 333 aa13.35□□□□□ -0.27
COL6A1-206ENST00000498614 SNRNP40Q96DI7 357 aaKnown RBP13.35□□□□□ -0.27
COL6A1-206ENST00000498614 GAFA1Q96PS6 74 aa13.35□□□□□ -0.27
COL6A1-206ENST00000498614 TMEM167BQ9NRX6 74 aa13.35□□□□□ -0.27
COL6A1-206ENST00000498614 IDI2-AS1Q9NZ38 188 aa13.35□□□□□ -0.27
COL6A1-206ENST00000498614 HYPMO75409 117 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 ZNF324O75467 553 aaPredicted RBP13.34□□□□□ -0.27
COL6A1-206ENST00000498614 IGLV2-8P01709 118 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 AMY1AP04745 511 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 OR5G3P0C626 314 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 C3orf79P0CE67 100 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 SELENOVP59797 346 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 STPG4Q8N801 248 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 CDC42EP3Q9UKI2 254 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 ZFP30Q9Y2G7 519 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 ARL2-SNX15V9GYD0 113 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 YLPM1P49750 1951 aaKnown RBP13.34□□□□□ -0.27
COL6A1-206ENST00000498614 COL6A6A6NMZ7 2263 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 IGKV1OR2-108A0A075B7D4 117 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 SIAH2O43255 324 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 OR7C2O60412 319 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 MMP23AO75900 390 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 IGLC2P0DOY2 106 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 IGLC3P0DOY3 106 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 MGST1P10620 155 aaKnown RBP13.34□□□□□ -0.27
COL6A1-206ENST00000498614 C3orf36Q3SXR2 165 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 SLC35E1Q96K37 410 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 WNT10AQ9GZT5 417 aa13.34□□□□□ -0.27
COL6A1-206ENST00000498614 CACNA1BQ00975 2339 aa13.33□□□□□ -0.28
COL6A1-206ENST00000498614 ISLRO14498 428 aa13.33□□□□□ -0.28
COL6A1-206ENST00000498614 CA1P00915 261 aaPredicted RBP13.33□□□□□ -0.28
COL6A1-206ENST00000498614 CD40P25942 277 aa13.33□□□□□ -0.28
COL6A1-206ENST00000498614 RPL19P84098 196 aaKnown RBP13.33□□□□□ -0.28
COL6A1-206ENST00000498614 SERTAD4Q9NUC0 356 aa13.33□□□□□ -0.28
COL6A1-206ENST00000498614 TECRQ9NZ01 308 aaKnown RBP13.33□□□□□ -0.28
COL6A1-206ENST00000498614 ZNRD1Q9P1U0 126 aa13.33□□□□□ -0.28
COL6A1-206ENST00000498614 UQCR10Q9UDW1 63 aa13.33□□□□□ -0.28
COL6A1-206ENST00000498614 SMIM27A0A1W2PRY6 76 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 NDUFB8O95169 186 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 TSKUQ8WUA8 353 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 IGF2BP2-AS1Q96M15 143 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 DNAJC4Q9NNZ3 241 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 OR51B2Q9Y5P1 312 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 DYSFO75923 2080 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 ITGB1BP1O14713 200 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 CEACAM8P31997 349 aaPredicted RBP13.32□□□□□ -0.28
COL6A1-206ENST00000498614 PRRX1P54821 245 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 IBA57Q5T440 356 aaKnown RBP13.32□□□□□ -0.28
COL6A1-206ENST00000498614 Q6ZN92 141 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 NHLRC2Q8NBF2 726 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 ZNF439Q8NDP4 499 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 CORO2AQ92828 525 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 TXN2Q99757 166 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 PRORYQ9H606 182 aa13.32□□□□□ -0.28
COL6A1-206ENST00000498614 DPRXA6NFQ7 191 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 TCF21O43680 179 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 ATOH7Q8N100 152 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 FAM168AQ92567 244 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 NCOR1P1Q9H4R4 102 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 PLEKHA3Q9HB20 300 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 RAB9BQ9NP90 201 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 HLA-DQA1P01909 254 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 APCSP02743 223 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 NTF3P20783 257 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 PPOXP50336 477 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 CCL8P80075 99 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 MLANAQ16655 118 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 COX19Q49B96 90 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 ZNF788Q6ZQV5 615 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.31□□□□□ -0.28
COL6A1-206ENST00000498614 FAM57AQ8TBR7 257 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 CBY1Q9Y3M2 126 aa13.31□□□□□ -0.28
COL6A1-206ENST00000498614 TRAV34A0A0B4J273 112 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 FNDC10F2Z333 226 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 TNFSF4P23510 183 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 HNRNPA3P51991 378 aaKnown RBP13.3□□□□□ -0.28
COL6A1-206ENST00000498614 SLAQ13239 276 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 C21orf62-AS1Q17RA5 79 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 MAJINQ3KP22 176 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 LCN12Q6JVE5 192 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 ZCCHC24Q8N2G6 241 aaKnown RBP13.3□□□□□ -0.28
COL6A1-206ENST00000498614 ADGRG4Q8IZF6 3080 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 USP24Q9UPU5 2620 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 LINC00479Q96M42 142 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 SSBP3Q9BWW4 388 aaPredicted RBP13.3□□□□□ -0.28
COL6A1-206ENST00000498614 LAMTOR2Q9Y2Q5 125 aa13.3□□□□□ -0.28
COL6A1-206ENST00000498614 J3QR06 171 aa13.29□□□□□ -0.28
COL6A1-206ENST00000498614 USF1P22415 310 aaPredicted RBP13.29□□□□□ -0.28
COL6A1-206ENST00000498614 OR9G1Q8NH87 305 aa13.29□□□□□ -0.28
COL6A1-206ENST00000498614 SLC35D1Q9NTN3 355 aa13.29□□□□□ -0.28
COL6A1-206ENST00000498614 IZUMO1RA6ND01 250 aa13.29□□□□□ -0.28
COL6A1-206ENST00000498614 IGKV1-16P04430 117 aa13.29□□□□□ -0.28
COL6A1-206ENST00000498614 REG1AP05451 166 aa13.29□□□□□ -0.28
COL6A1-206ENST00000498614 WFDC8Q8IUA0 241 aa13.29□□□□□ -0.28
COL6A1-206ENST00000498614 SH3BGRL2Q9UJC5 107 aa13.29□□□□□ -0.28
COL6A1-206ENST00000498614 PCNX1Q96RV3 2341 aa13.28□□□□□ -0.28
COL6A1-206ENST00000498614 TRAV5A0A0B4J249 113 aa13.28□□□□□ -0.28
COL6A1-206ENST00000498614 MORN5Q5VZ52 161 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms