RNA–Protein interactions for RNA: ENST00000498438.1

HOXD11-202, Transcript of homeobox D11, humanhuman

TSL 1 (best)

Gene HOXD11, Length 1,259 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11-202ENST00000498438 LAMTOR1Q6IAA8 161 aa13.75□□□□□ -0.21
HOXD11-202ENST00000498438 MUC7Q8TAX7 377 aa13.75□□□□□ -0.21
HOXD11-202ENST00000498438 CITED4Q96RK1 184 aa13.75□□□□□ -0.21
HOXD11-202ENST00000498438 FNDC4Q9H6D8 234 aaPredicted RBP13.75□□□□□ -0.21
HOXD11-202ENST00000498438 RETNQ9HD89 108 aa13.75□□□□□ -0.21
HOXD11-202ENST00000498438 HEYLQ9NQ87 328 aaPredicted RBP13.75□□□□□ -0.21
HOXD11-202ENST00000498438 SMPXQ9UHP9 88 aa13.75□□□□□ -0.21
HOXD11-202ENST00000498438 IGHV3-49A0A0A0MS15 119 aa13.74□□□□□ -0.21
HOXD11-202ENST00000498438 CEBPZOSA8MTT3 80 aa13.74□□□□□ -0.21
HOXD11-202ENST00000498438 C3orf84H3BNL1 204 aa13.74□□□□□ -0.21
HOXD11-202ENST00000498438 SULT1A3P0DMM9 295 aa13.74□□□□□ -0.21
HOXD11-202ENST00000498438 SULT1A4P0DMN0 295 aa13.74□□□□□ -0.21
HOXD11-202ENST00000498438 SPANXN2Q5MJ10 180 aa13.74□□□□□ -0.21
HOXD11-202ENST00000498438 TMED4Q7Z7H5 227 aa13.74□□□□□ -0.21
HOXD11-202ENST00000498438 TMEM116Q8NCL8 245 aa13.74□□□□□ -0.21
HOXD11-202ENST00000498438 HIPK2Q9H2X6 1198 aa13.74□□□□□ -0.21
HOXD11-202ENST00000498438 MRPL36Q9P0J6 103 aaKnown RBP13.74□□□□□ -0.21
HOXD11-202ENST00000498438 A0A0B4J2A0 478 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 CHEK1O14757 476 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 ANXA3P12429 323 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 HTR2BP41595 481 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 NMSQ5H8A3 153 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 TOMM20LQ6UXN7 152 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 LYZL2Q7Z4W2 148 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 LGI3Q8N145 548 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 DEDD2Q8WXF8 326 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 RNF2Q99496 336 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 RHPN1-AS1Q9BWJ2 59 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 SRRQ9GZT4 340 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 SHPKQ9UHJ6 478 aa13.73□□□□□ -0.21
HOXD11-202ENST00000498438 IGHV3OR16-13A0A075B7E8 117 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 TRAV14DV4A0A0A6YYC5 116 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 IGHV3-74A0A0B4J1X5 117 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 TMEM50AO95807 157 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 SRPXP78539 464 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 MLANAQ16655 118 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 C2orf83Q53S99 150 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 ZNF600Q6ZNG1 722 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 SLC24A4Q8NFF2 622 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 OR4X1Q8NH49 305 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 GINS3Q9BRX5 216 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 EDA2RQ9HAV5 297 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 UBQLN2Q9UHD9 624 aa13.72□□□□□ -0.21
HOXD11-202ENST00000498438 PUS1Q9Y606 427 aaKnown RBP eCLIP13.72□□□□□ -0.21
HOXD11-202ENST00000498438 CLN5O75503 358 aa13.71□□□□□ -0.21
HOXD11-202ENST00000498438 CCR6P51684 374 aa13.71□□□□□ -0.21
HOXD11-202ENST00000498438 SMCO1Q147U7 214 aa13.71□□□□□ -0.21
HOXD11-202ENST00000498438 TMEM128Q5BJH2 165 aa13.71□□□□□ -0.21
HOXD11-202ENST00000498438 FAM110AQ9BQ89 295 aa13.71□□□□□ -0.21
HOXD11-202ENST00000498438 ZFAND3Q9H8U3 227 aa13.71□□□□□ -0.21
HOXD11-202ENST00000498438 CACFD1Q9UGQ2 172 aa13.71□□□□□ -0.21
HOXD11-202ENST00000498438 A0A1B0GU03 582 aa13.7□□□□□ -0.22
HOXD11-202ENST00000498438 RPS10-NUDT3A0A1W2PQS6 291 aa13.7□□□□□ -0.22
HOXD11-202ENST00000498438 OR4C46A6NHA9 309 aa13.7□□□□□ -0.22
HOXD11-202ENST00000498438 TNFRSF9Q07011 255 aa13.7□□□□□ -0.22
HOXD11-202ENST00000498438 ODF3L2Q3SX64 289 aa13.7□□□□□ -0.22
HOXD11-202ENST00000498438 TMEM170AQ8WVE7 144 aa13.7□□□□□ -0.22
HOXD11-202ENST00000498438 SLC25A21Q9BQT8 299 aaPredicted RBP13.7□□□□□ -0.22
HOXD11-202ENST00000498438 GGTLC1Q9BX51 225 aa13.7□□□□□ -0.22
HOXD11-202ENST00000498438 HSPB7Q9UBY9 170 aa13.7□□□□□ -0.22
HOXD11-202ENST00000498438 SCGB2A1O75556 95 aa13.69□□□□□ -0.22
HOXD11-202ENST00000498438 VAMP1P23763 118 aa13.69□□□□□ -0.22
HOXD11-202ENST00000498438 NPY1RP25929 384 aa13.69□□□□□ -0.22
HOXD11-202ENST00000498438 RNASEH2CQ8TDP1 164 aaKnown RBP13.69□□□□□ -0.22
HOXD11-202ENST00000498438 ST8SIA2Q92186 375 aa13.69□□□□□ -0.22
HOXD11-202ENST00000498438 LOC102724200A0A096LPH7 203 aaPredicted RBP13.68□□□□□ -0.22
HOXD11-202ENST00000498438 IGKV1-17P01599 117 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 APOHP02749 345 aaPredicted RBP13.68□□□□□ -0.22
HOXD11-202ENST00000498438 LYL1P12980 280 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 BMI1P35226 326 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 RND2P52198 227 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 BAK1Q16611 211 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 TIGITQ495A1 244 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 CASC10Q5T4H9 136 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 TRIQKQ629K1 86 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 OR1S1Q8NH92 325 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 DTD1Q8TEA8 209 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 RBKSQ9H477 322 aa13.68□□□□□ -0.22
HOXD11-202ENST00000498438 CSMD3Q7Z407 3707 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 IGKV3-7A0A075B6H7 116 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 PIGBOS1A0A0B4J2F0 54 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 DUXBA0A1W2PPF3 345 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 SLC25A4P12235 298 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 TFPI2P48307 235 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 INPP1P49441 399 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 PPP1R1AQ13522 171 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 RBMS2Q15434 407 aaKnown RBP13.67□□□□□ -0.22
HOXD11-202ENST00000498438 FAM90A2PQ658T7 463 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 PRSS54Q6PEW0 395 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 TCF24Q7RTU0 167 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 CENPSQ8N2Z9 138 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 VSIRQ9H7M9 311 aa13.67□□□□□ -0.22
HOXD11-202ENST00000498438 TRAV30A0A087WSZ9 112 aa13.66□□□□□ -0.22
HOXD11-202ENST00000498438 IGHV3-66A0A0C4DH42 116 aa13.66□□□□□ -0.22
HOXD11-202ENST00000498438 SFT2D2O95562 160 aa13.66□□□□□ -0.22
HOXD11-202ENST00000498438 IFNA10P01566 189 aa13.66□□□□□ -0.22
HOXD11-202ENST00000498438 IGLC1P0CG04 106 aa13.66□□□□□ -0.22
HOXD11-202ENST00000498438 NOXA1Q86UR1 476 aa13.66□□□□□ -0.22
HOXD11-202ENST00000498438 LILRB2Q8N423 598 aa13.66□□□□□ -0.22
HOXD11-202ENST00000498438 LRTM2Q8N967 370 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms