RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 SEC11AP67812 179 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 MUC21Q5SSG8 566 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 AMMECR1LQ6DCA0 310 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 C6orf15Q6UXA7 325 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-230ENST00000495090 SSX8Q7RTT4 187 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 OR1L4Q8NGR5 311 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 NDFIP1Q9BT67 221 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 PILRBQ9UKJ0 227 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 ZNF835Q9Y2P0 537 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 KLF12Q9Y4X4 402 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 GAGE12BA1L429 117 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 VWC2LB2RUY7 222 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 SRRM5B3KS81 715 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 RNASE2P10153 161 aaKnown RBP7.88□□□□□ -1.15
SYNE1-230ENST00000495090 GPR6P46095 362 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-230ENST00000495090 ARF6P62330 175 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 PSG9Q00887 426 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 C1orf229Q6ZS94 237 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-230ENST00000495090 TCF24Q7RTU0 167 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 LRRC29Q8WV35 223 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 H1FXQ92522 213 aaKnown RBP7.88□□□□□ -1.15
SYNE1-230ENST00000495090 PAXXQ9BUH6 204 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 SSBP4Q9BWG4 385 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-230ENST00000495090 MAP1LC3CQ9BXW4 147 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 HES7Q9BYE0 225 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 PRSS22Q9GZN4 317 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 CALYQ9NYX4 217 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 ZNF492Q9P255 531 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 HSPB8Q9UJY1 196 aa7.88□□□□□ -1.15
SYNE1-230ENST00000495090 IGKV1D-17A0A075B6S4 117 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 hDV102S1A0JD36 115 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 A8MWL6 223 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 NDUFS8O00217 210 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 TIMM8AO60220 97 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-230ENST00000495090 IGKV3-15P01624 115 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 IGLC1P0CG04 106 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 SAA2P0DJI9 122 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-230ENST00000495090 IGHV1-2P23083 117 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 GATA2P23769 480 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-230ENST00000495090 CAMPP49913 170 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 C3AR1Q16581 482 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 TMEM30BQ3MIR4 351 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 LINC01545Q5VT33 79 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 MBNL2Q5VZF2 373 aaKnown RBP7.87□□□□□ -1.15
SYNE1-230ENST00000495090 OR9G1Q8NH87 305 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 DPF1Q92782 380 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 ST6GALNAC6Q969X2 333 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 LINC00479Q96M42 142 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 RPP21Q9H633 154 aaKnown RBP7.87□□□□□ -1.15
SYNE1-230ENST00000495090 RNF24Q9Y225 148 aa7.87□□□□□ -1.15
SYNE1-230ENST00000495090 KLF13Q9Y2Y9 288 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-230ENST00000495090 DLL1O00548 723 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 COX8AP10176 69 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 HOXA4Q00056 320 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-230ENST00000495090 CT45A1Q5HYN5 189 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 PMS2CLQ68D20 193 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 MOB3BQ86TA1 216 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 STXBP6Q8NFX7 210 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 CT45A3Q8NHU0 189 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 GPR82Q96P67 336 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 MLST8Q9BVC4 326 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 FSCN3Q9NQT6 498 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 PI4KAP42356 2102 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 TEX50A0A1B0GTY4 177 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 SRRM4A7MD48 611 aaKnown RBP7.86□□□□□ -1.15
SYNE1-230ENST00000495090 CORTO00230 105 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 COX7A2P2O60397 106 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 GPR183P32249 361 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 C17orf58Q2M2W7 97 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 MORN5Q5VZ52 161 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 C1orf162Q8NEQ5 155 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-230ENST00000495090 FXYD5Q96DB9 178 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 PLPPR2Q96GM1 343 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 HINT2Q9BX68 163 aa7.86□□□□□ -1.15
SYNE1-230ENST00000495090 CACNA1DQ01668 2161 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 DOCK10Q96BY6 2186 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 MYO15AQ9UKN7 3530 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 LOC102724200A0A096LPH7 203 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-230ENST00000495090 TRAV5A0A0B4J249 113 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 TRAV8-6A0A0B4J262 113 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 KBTBD11-OT1A0A1B0GTJ5 212 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 C19orf71A6NCJ1 209 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 KLRC4-KLRK1H3BQV0 150 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 FSTL3O95633 263 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 MEOX1P50221 254 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 C10orf113Q5VZT2 155 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 UFSP1Q6NVU6 142 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 ZNF841Q6ZN19 808 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 RBPMS2Q6ZRY4 209 aaKnown RBP7.85□□□□□ -1.15
SYNE1-230ENST00000495090 EPDR1Q9UM22 224 aa7.85□□□□□ -1.15
SYNE1-230ENST00000495090 SH2D7A6NKC9 451 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-230ENST00000495090 CER1O95813 267 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 MYOD1P15172 320 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 CEACAM3P40198 252 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 Q6ZT83 130 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 LINC00173Q6ZV60 143 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 GTF2H5Q6ZYL4 71 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 THAP8Q8NA92 274 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 TMEM190Q8WZ59 177 aa7.84□□□□□ -1.15
SYNE1-230ENST00000495090 FMC1Q96HJ9 113 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms