RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 NUTF2P61970 127 aaKnown RBP8.51□□□□□ -1.05
COL6A3-213ENST00000493475 LSM3P62310 102 aaKnown RBP8.51□□□□□ -1.05
COL6A3-213ENST00000493475 EWSR1Q01844 656 aaKnown RBP eCLIP8.51□□□□□ -1.05
COL6A3-213ENST00000493475 FAM90A2PQ658T7 463 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 TOMM20LQ6UXN7 152 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 LYSMD2Q8IV50 215 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 ZFAND1Q8TCF1 268 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 TMEM230Q96A57 120 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 HRH4Q9H3N8 390 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 VSIRQ9H7M9 311 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 COPZ2Q9P299 210 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 PFDN2Q9UHV9 154 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 HYDINQ4G0P3 5121 aa8.51□□□□□ -1.05
COL6A3-213ENST00000493475 HELTA6NFD8 242 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 DBX1A6NMT0 343 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 FAM25AB3EWG3 89 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 FAM25CB3EWG5 89 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 FAM25GB3EWG6 89 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 INS-IGF2F8WCM5 200 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 MIFP14174 115 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 RORCP51449 518 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 NANOS2P60321 138 aaKnown RBP8.5□□□□□ -1.05
COL6A3-213ENST00000493475 RND3P61587 244 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 NOXA1Q86UR1 476 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 STXBP6Q8NFX7 210 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 ST8SIA2Q92186 375 aa8.5□□□□□ -1.05
COL6A3-213ENST00000493475 PLECQ15149 4684 aaKnown RBP8.49□□□□□ -1.05
COL6A3-213ENST00000493475 C3orf85A0A1B0GTC6 90 aa8.49□□□□□ -1.05
COL6A3-213ENST00000493475 IGHV3-48P01763 117 aa8.49□□□□□ -1.05
COL6A3-213ENST00000493475 PIGPP57054 158 aa8.49□□□□□ -1.05
COL6A3-213ENST00000493475 LCE3BQ5TA77 95 aa8.49□□□□□ -1.05
COL6A3-213ENST00000493475 LEMD1Q68G75 181 aa8.49□□□□□ -1.05
COL6A3-213ENST00000493475 FAM219AQ8IW50 185 aa8.49□□□□□ -1.05
COL6A3-213ENST00000493475 RPP25LQ8N5L8 163 aaKnown RBP8.49□□□□□ -1.05
COL6A3-213ENST00000493475 C1QTNF4Q9BXJ3 329 aa8.49□□□□□ -1.05
COL6A3-213ENST00000493475 IGLL5B9A064 214 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 GSTZ1O43708 216 aaPredicted RBP8.48□□□□□ -1.05
COL6A3-213ENST00000493475 CLN5O75503 358 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 TMEM50AO95807 157 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 NUP62P37198 522 aaPredicted RBP8.48□□□□□ -1.05
COL6A3-213ENST00000493475 HTR2BP41595 481 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 RPL5P46777 297 aaKnown RBP8.48□□□□□ -1.05
COL6A3-213ENST00000493475 SNRPD3P62318 126 aaKnown RBP8.48□□□□□ -1.05
COL6A3-213ENST00000493475 ZNF124Q15973 351 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 ETFRF1Q6IPR1 90 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 OR4X1Q8NH49 305 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 Q8WTZ3 238 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 YIPF6Q96EC8 236 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 ZNF414Q96IQ9 312 aa8.48□□□□□ -1.05
COL6A3-213ENST00000493475 C14orf166Q9Y224 244 aaKnown RBP8.48□□□□□ -1.05
COL6A3-213ENST00000493475 TRAV10A0A0B4J240 114 aa8.47□□□□□ -1.05
COL6A3-213ENST00000493475 IGHV3-66A0A0C4DH42 116 aa8.47□□□□□ -1.05
COL6A3-213ENST00000493475 DEDDO75618 318 aa8.47□□□□□ -1.05
COL6A3-213ENST00000493475 SLC25A4P12235 298 aa8.47□□□□□ -1.05
COL6A3-213ENST00000493475 P2RY1P47900 373 aa8.47□□□□□ -1.05
COL6A3-213ENST00000493475 SPINK9Q5DT21 86 aa8.47□□□□□ -1.05
COL6A3-213ENST00000493475 HEYLQ9NQ87 328 aaPredicted RBP8.47□□□□□ -1.05
COL6A3-213ENST00000493475 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.47□□□□□ -1.05
COL6A3-213ENST00000493475 PIGBOS1A0A0B4J2F0 54 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 TEX13DA0A0J9YY54 714 aaPredicted RBP8.46□□□□□ -1.06
COL6A3-213ENST00000493475 M0QYG6 137 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 IGKV1-39P01597 117 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 IGKV1D-39P04432 117 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 ELK1P19419 428 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 NPY1RP25929 384 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 CRYBB3P26998 211 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 TGFBR1P36897 503 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 TAS2R19P59542 299 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 SPCS3P61009 180 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 DHRS2Q13268 280 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 MEF2DQ14814 521 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 SCGB2B2Q4G0G5 96 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 OR1S2Q8NGQ3 325 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 TERB2Q8NHR7 220 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 RNASEH2CQ8TDP1 164 aaKnown RBP8.46□□□□□ -1.06
COL6A3-213ENST00000493475 TBC1D24Q9ULP9 559 aa8.46□□□□□ -1.06
COL6A3-213ENST00000493475 A0A0B4J293 547 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 DEFB4AO15263 64 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 HPGDSO60760 199 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 HNRNPCP07910 306 aaKnown RBP eCLIP8.45□□□□□ -1.06
COL6A3-213ENST00000493475 ZNF688P0C7X2 276 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 RNASE2P10153 161 aaKnown RBP8.45□□□□□ -1.06
COL6A3-213ENST00000493475 PI3P19957 117 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 ETV6P41212 452 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 PPP5CP53041 499 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 MRPS10P82664 201 aaKnown RBP8.45□□□□□ -1.06
COL6A3-213ENST00000493475 DHODHQ02127 395 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 ACTL10Q5JWF8 245 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 TRPT1Q86TN4 253 aaKnown RBP8.45□□□□□ -1.06
COL6A3-213ENST00000493475 OR52E5Q8NH55 327 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 TP53RKQ96S44 253 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 ABHD1Q96SE0 405 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 EXTL2Q9UBQ6 330 aa8.45□□□□□ -1.06
COL6A3-213ENST00000493475 IGHV4-28A0A0C4DH34 117 aa8.44□□□□□ -1.06
COL6A3-213ENST00000493475 A0A1B0GU03 582 aa8.44□□□□□ -1.06
COL6A3-213ENST00000493475 CEBPZOSA8MTT3 80 aa8.44□□□□□ -1.06
COL6A3-213ENST00000493475 DISC1C4P0D8 188 aa8.44□□□□□ -1.06
COL6A3-213ENST00000493475 K7EQG2 157 aa8.44□□□□□ -1.06
COL6A3-213ENST00000493475 RAB3DO95716 219 aa8.44□□□□□ -1.06
COL6A3-213ENST00000493475 IGKV1-5P01602 117 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms