RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 NOXA1Q86UR1 476 aa12.37□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 RNASEH2CQ8TDP1 164 aaKnown RBP12.37□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 FNDC4Q9H6D8 234 aaPredicted RBP12.37□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 PALMDQ9NP74 551 aa12.37□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 TMEM213A2RRL7 107 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 NDUFA4O00483 81 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 MED6O75586 246 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 CTSGP08311 255 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 FOLR2P14207 255 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 GP9P14770 177 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 EDN2P20800 178 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 RELQ04864 619 aaPredicted RBP12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ADAMTSL5Q6ZMM2 481 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 DYNLRB2Q8TF09 96 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 TMEM170AQ8WVE7 144 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 TMEM190Q8WZ59 177 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 SEC22CQ9BRL7 303 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 UFC1Q9Y3C8 167 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 U3KQ87 197 aa12.36□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 MPTX1A8MV57 137 aa12.35□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 IAPPP10997 89 aa12.35□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ELLP55199 621 aaPredicted RBP12.35□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 DEFA1P59665 94 aa12.35□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 DEFA3P59666 94 aa12.35□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 LCN12Q6JVE5 192 aa12.35□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 OR2K2Q8NGT1 345 aa12.35□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ZNF431Q8TF32 576 aaPredicted RBP12.35□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 SYNGR2O43760 224 aa12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 CBLN1P23435 193 aa12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 ATP5IP56385 69 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 DCTN2Q13561 401 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 MLANAQ16655 118 aa12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 TM4SF20Q53R12 229 aa12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 OR4D5Q8NGN0 318 aa12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 OR4X1Q8NH49 305 aa12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 CACNG8Q8WXS5 425 aa12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 MARC2Q969Z3 335 aa12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 CIB3Q96Q77 187 aaPredicted RBP12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 MAGT1Q9H0U3 335 aa12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 TECRQ9NZ01 308 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 MRPL36Q9P0J6 103 aaKnown RBP12.34□□□□□ -0.43
MSH5-SAPCD1-206ENST00000491552 CLN5O75503 358 aa12.33□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 SCGB2A1O75556 95 aa12.33□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 TMEM50AO95807 157 aa12.33□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 SLC25A4P12235 298 aa12.33□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 DEFB121Q5J5C9 76 aa12.33□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 ETFRF1Q6IPR1 90 aa12.33□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 ZNF414Q96IQ9 312 aa12.33□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 C20orf24Q9BUV8 137 aa12.33□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 DAZ1Q9NQZ3 744 aaKnown RBP12.33□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 IGHV3OR16-8A0A075B7F1 116 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 IFNA4P05014 189 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 IL5P05113 134 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 C8orf88P0DMB2 117 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 NKX2-1P43699 371 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 ID3Q02535 119 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 IAH1Q2TAA2 248 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 DEFB114Q30KQ6 69 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 CD300EQ496F6 205 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 ZNF600Q6ZNG1 722 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 NRARPQ7Z6K4 114 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 C12orf45Q8N5I9 185 aaPredicted RBP12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 UXS1Q8NBZ7 420 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 OR10C1Q96KK4 312 aa12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 MRPL27Q9P0M9 148 aaKnown RBP12.32□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 IZUMO1RA6ND01 250 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 C15orf62A8K5M9 175 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 K7EMT4 169 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 WRBO00258 174 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 CCSO14618 274 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 YIF1AO95070 293 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 RAB11AP62491 216 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 RPP30P78346 268 aaKnown RBP12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 CD69Q07108 199 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 PRSS54Q6PEW0 395 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 BTNL8Q6UX41 500 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 SLC16A13Q7RTY0 426 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 ZBTB8BQ8NAP8 495 aaPredicted RBP12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 MLXQ9UH92 298 aa12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 LSM4Q9Y4Z0 139 aaKnown RBP12.31□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 TRAV30A0A087WSZ9 112 aa12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 ZNF207O43670 478 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 SCGB1D2O95969 90 aa12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 RND2P52198 227 aa12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 POLR2GP62487 172 aaKnown RBP eCLIP12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 TMEM116Q8NCL8 245 aa12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 GPN1Q9HCN4 374 aaPredicted RBP12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 GSKIPQ9P0R6 139 aa12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 PAIP2BQ9ULR5 123 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 PUS1Q9Y606 427 aaKnown RBP eCLIP12.3□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 INMT-MINDY4F8WBC2 141 aa12.29□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 TIGITQ495A1 244 aa12.29□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 OR1S2Q8NGQ3 325 aa12.29□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 NPIPB3Q92617 1050 aa12.29□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 ACY3Q96HD9 319 aa12.29□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 GINS3Q9BRX5 216 aa12.29□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 SELENOKQ9Y6D0 94 aa12.29□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 C5orf51A6NDU8 294 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 FAM25EA8MYX2 175 aa12.28□□□□□ -0.44
MSH5-SAPCD1-206ENST00000491552 H3BP45 60 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms