RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 A0A0B4J2A0 478 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 C9orf170A2RU37 121 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 IGKV1-39P01597 117 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 IGKV1D-39P04432 117 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 ADMP35318 185 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 PPP1R1AQ13522 171 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 SPSB3Q6PJ21 355 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 C12orf45Q8N5I9 185 aaPredicted RBP9.18□□□□□ -0.94
SDC3-204ENST00000487984 UBAC2Q8NBM4 344 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 OR1L6Q8NGR2 347 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 GALNT14Q96FL9 552 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 SEC22AQ96IW7 307 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 TMEM56Q96MV1 263 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 ATP6V0BQ99437 205 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 SEC22CQ9BRL7 303 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 GGTLC1Q9BX51 225 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 DAZ1Q9NQZ3 744 aaKnown RBP9.18□□□□□ -0.94
SDC3-204ENST00000487984 SHPKQ9UHJ6 478 aa9.18□□□□□ -0.94
SDC3-204ENST00000487984 DNAH1Q9P2D7 4330 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 IGHV3OR16-8A0A075B7F1 116 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 C3orf85A0A1B0GTC6 90 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 A0A1B0GVG6 124 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 NDUFA4O00483 81 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 PFDN1O60925 122 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 ATG12O94817 140 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 RRAS2P62070 204 aaPredicted RBP9.17□□□□□ -0.94
SDC3-204ENST00000487984 Q56UQ5 140 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 LGI3Q8N145 548 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 OR2C3Q8N628 320 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 OR1P1Q8NH06 330 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 MITD1Q8WV92 249 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 TMEM230Q96A57 120 aa9.17□□□□□ -0.94
SDC3-204ENST00000487984 LOC102724200A0A096LPH7 203 aaPredicted RBP9.16□□□□□ -0.94
SDC3-204ENST00000487984 A0A0B4J293 547 aa9.16□□□□□ -0.94
SDC3-204ENST00000487984 TSPAN4O14817 238 aa9.16□□□□□ -0.94
SDC3-204ENST00000487984 ZNF207O43670 478 aaKnown RBP9.16□□□□□ -0.94
SDC3-204ENST00000487984 IFNA21P01568 189 aa9.16□□□□□ -0.94
SDC3-204ENST00000487984 H2BFWTQ7Z2G1 175 aa9.16□□□□□ -0.94
SDC3-204ENST00000487984 OR4A16Q8NH70 328 aa9.16□□□□□ -0.94
SDC3-204ENST00000487984 CHAC2Q8WUX2 184 aa9.16□□□□□ -0.94
SDC3-204ENST00000487984 ZNF414Q96IQ9 312 aa9.16□□□□□ -0.94
SDC3-204ENST00000487984 SPAG8Q99932 426 aaPredicted RBP9.16□□□□□ -0.94
SDC3-204ENST00000487984 C20orf24Q9BUV8 137 aa9.16□□□□□ -0.94
SDC3-204ENST00000487984 DUXBA0A1W2PPF3 345 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 I3L2K1 104 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 CTSGP08311 255 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 OR5AC1P0C628 307 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 SUPT4H1P63272 117 aaKnown RBP9.15□□□□□ -0.94
SDC3-204ENST00000487984 PRCDQ00LT1 54 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 ZNF114Q8NC26 417 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 IL17DQ8TAD2 202 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 ASB13Q8WXK3 278 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 IL22RA2Q969J5 263 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 MISP3Q96FF7 219 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 OVOL2Q9BRP0 275 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 TMEM222Q9H0R3 208 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 UBQLN2Q9UHD9 624 aa9.15□□□□□ -0.94
SDC3-204ENST00000487984 C15orf62A8K5M9 175 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 K7EMT4 169 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 UCP1P25874 307 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 FCGR2BP31994 310 aaPredicted RBP9.14□□□□□ -0.95
SDC3-204ENST00000487984 HSPE1P61604 102 aaKnown RBP9.14□□□□□ -0.95
SDC3-204ENST00000487984 TMEM187Q14656 261 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 IZUMO4Q1ZYL8 232 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 ODF3L2Q3SX64 289 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 LAMTOR1Q6IAA8 161 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 AKAP14Q86UN6 197 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 LRTM2Q8N967 370 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 MGAT4CQ9UBM8 478 aa9.14□□□□□ -0.95
SDC3-204ENST00000487984 NUPL2O15504 423 aaKnown RBP9.13□□□□□ -0.95
SDC3-204ENST00000487984 CCNKO75909 580 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 MT-CO2P00403 227 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 IGKV1-5P01602 117 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 IGHV3-48P01763 117 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 P0C879 139 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 SULT1A3P0DMM9 295 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 SULT1A4P0DMN0 295 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 MFAP4P55083 255 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 CYCSP99999 105 aaKnown RBP9.13□□□□□ -0.95
SDC3-204ENST00000487984 RELQ04864 619 aaPredicted RBP9.13□□□□□ -0.95
SDC3-204ENST00000487984 SP6Q3SY56 376 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 SPINK9Q5DT21 86 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 GLYATL2Q8WU03 294 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 RBPMSQ93062 196 aaKnown RBP9.13□□□□□ -0.95
SDC3-204ENST00000487984 TP53RKQ96S44 253 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 TXN2Q99757 166 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 SMPXQ9UHP9 88 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 TMED3Q9Y3Q3 217 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 TMEM56-RWDD3S4R434 201 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 HYDINQ4G0P3 5121 aa9.13□□□□□ -0.95
SDC3-204ENST00000487984 IGHV7-4-1A0A0J9YVY3 117 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 OR4C46A6NHA9 309 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 CHEK1O14757 476 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 YIF1AO95070 293 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 CDS2O95674 445 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 ERHP84090 104 aaKnown RBP9.12□□□□□ -0.95
SDC3-204ENST00000487984 FCN2Q15485 313 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 TMEM268Q5VZI3 342 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 GSG1LQ6UXU4 331 aa9.12□□□□□ -0.95
SDC3-204ENST00000487984 RNASE11Q8TAA1 199 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms