RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LAMTOR2Q9Y2Q5 125 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 CLPSP04118 112 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 TFF1P04155 84 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 PSMG4Q5JS54 123 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 PPP1R27Q86WC6 154 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 TNFRSF18Q9Y5U5 241 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 APC2O95996 2303 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 CFHR1Q03591 330 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 TRBV24-1A0A075B6N3 115 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 IGKV1-27A0A075B6S5 117 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 PINLYPA6NC86 204 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 PRCDQ00LT1 54 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 HIST1H2BLQ99880 126 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 PGPEP1LA6NFU8 196 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 CXCL1P09341 107 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 GPR183P32249 361 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 NIT1Q86X76 327 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 TMEM101Q96IK0 257 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 GNB1LQ9BYB4 327 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 TOMM7Q9P0U1 55 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 EPDR1Q9UM22 224 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 TCRBV4S1A1TA0A5B7 111 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 HTN3P15516 51 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 TEX38Q6PEX7 206 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 TRAV1-1A0A0B4J248 108 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 CD69Q07108 199 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 C1QL4Q86Z23 238 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 NUDT11Q96G61 164 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 SCGB3A1Q96QR1 104 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 SSBP4Q9BWG4 385 aaPredicted RBP13.69□□□□□ -0.22
COL7A1-210ENST00000487017 OR10J3Q5JRS4 329 aa13.69□□□□□ -0.22
COL7A1-210ENST00000487017 CEACAM1P13688 526 aa13.68□□□□□ -0.22
COL7A1-210ENST00000487017 ZNF124Q15973 351 aa13.68□□□□□ -0.22
COL7A1-210ENST00000487017 HIST3H2BBQ8N257 126 aa13.68□□□□□ -0.22
COL7A1-210ENST00000487017 TEX29Q8N6K0 151 aa13.68□□□□□ -0.22
COL7A1-210ENST00000487017 NEU4Q8WWR8 484 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-210ENST00000487017 C10orf126Q8N4M7 172 aa13.68□□□□□ -0.22
COL7A1-210ENST00000487017 ZFP36L1Q07352 338 aaKnown RBP13.68□□□□□ -0.22
COL7A1-210ENST00000487017 CSRP2Q16527 193 aa13.68□□□□□ -0.22
COL7A1-210ENST00000487017 A0A1W2PRX2 142 aa13.68□□□□□ -0.22
COL7A1-210ENST00000487017 PYYP10082 97 aa13.68□□□□□ -0.22
COL7A1-210ENST00000487017 SVILO95425 2214 aa13.67□□□□□ -0.22
COL7A1-210ENST00000487017 GGNQ86UU5 652 aa13.67□□□□□ -0.22
COL7A1-210ENST00000487017 DUX3Q96PT4 197 aa13.67□□□□□ -0.22
COL7A1-210ENST00000487017 PNRC2Q9NPJ4 139 aaKnown RBP13.67□□□□□ -0.22
COL7A1-210ENST00000487017 SEMA5BQ9P283 1151 aa13.67□□□□□ -0.22
COL7A1-210ENST00000487017 SRSF4Q08170 494 aaKnown RBP13.67□□□□□ -0.22
COL7A1-210ENST00000487017 PVRIGQ6DKI7 326 aa13.67□□□□□ -0.22
COL7A1-210ENST00000487017 TREML4Q6UXN2 200 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 KLHDC3Q9BQ90 382 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 ALKBH7Q9BT30 221 aaPredicted RBP13.66□□□□□ -0.22
COL7A1-210ENST00000487017 AHCTF1Q8WYP5 2266 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 NBR2O15453 112 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 QRFPP83859 136 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 PGPEP1Q9NXJ5 209 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 H7C1H1 209 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 PRB3Q04118 309 aaPredicted RBP13.66□□□□□ -0.22
COL7A1-210ENST00000487017 SPRR3Q9UBC9 169 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 DOCK6Q96HP0 2047 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 IGHV1-18A0A0C4DH31 117 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 NMSQ5H8A3 153 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 CLEC19AQ6UXS0 136 aa13.66□□□□□ -0.22
COL7A1-210ENST00000487017 KIF26BQ2KJY2 2108 aa13.65□□□□□ -0.22
COL7A1-210ENST00000487017 TRAV9-2A0A087WT02 112 aa13.65□□□□□ -0.22
COL7A1-210ENST00000487017 IGKV3D-20A0A0C4DH25 116 aa13.65□□□□□ -0.22
COL7A1-210ENST00000487017 RNASE4P34096 147 aaKnown RBP13.65□□□□□ -0.22
COL7A1-210ENST00000487017 C19orf67A6NJJ6 358 aa13.65□□□□□ -0.22
COL7A1-210ENST00000487017 TMEM133Q9H2Q1 129 aa13.65□□□□□ -0.22
COL7A1-210ENST00000487017 SPCS1Q9Y6A9 102 aa13.65□□□□□ -0.22
COL7A1-210ENST00000487017 GFRA3O60609 400 aa13.65□□□□□ -0.22
COL7A1-210ENST00000487017 LEPP41159 167 aa13.65□□□□□ -0.23
COL7A1-210ENST00000487017 NUTF2P61970 127 aaKnown RBP13.65□□□□□ -0.23
COL7A1-210ENST00000487017 GFI1BQ5VTD9 330 aa13.65□□□□□ -0.23
COL7A1-210ENST00000487017 STAG3L3P0CL85 134 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 RNF125Q96EQ8 232 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 HEATR5BQ9P2D3 2071 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-210ENST00000487017 A0A0G2JLM5 398 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 NDUFA3O95167 84 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 LINC00614P0C842 121 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 TIMP3P35625 211 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 C17orf82Q86X59 251 aaPredicted RBP13.64□□□□□ -0.23
COL7A1-210ENST00000487017 JKAMPQ9P055 326 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 CLDN16Q9Y5I7 305 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 FABP5P3A8MUU1 101 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 AMBPP02760 352 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 GGTLC1Q9BX51 225 aa13.64□□□□□ -0.23
COL7A1-210ENST00000487017 IGHV3-11P01762 117 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 TYMSP04818 313 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 FOXG1P55316 489 aaPredicted RBP13.63□□□□□ -0.23
COL7A1-210ENST00000487017 NTN3O00634 580 aaPredicted RBP13.63□□□□□ -0.23
COL7A1-210ENST00000487017 APOMO95445 188 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 TSKUQ8WUA8 353 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 TMEM95Q3KNT9 176 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 ABHD17AQ96GS6 310 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 ZSWIM8A7E2V4 1837 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 A0A1B0GWB2 263 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 NUDT10Q8NFP7 164 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 LINC01587Q99440 93 aa13.63□□□□□ -0.23
COL7A1-210ENST00000487017 FOXL1Q12952 345 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 146.4 ms