RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SLC37A4O43826 429 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 DUSP14O95147 198 aaKnown RBP2.95□□□□□ -1.94
VPS41-212ENST00000482217 NCR2O95944 276 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 PMP2P02689 132 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 FABP2P12104 132 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 PGAM2P15259 253 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 SDC2P34741 201 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 ZNF83P51522 516 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 DIO3P55073 304 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 MYL5Q02045 173 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 BSPH1Q075Z2 132 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 Q5BKY6 102 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 FOXI2Q6ZQN5 318 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 LINC00305Q7Z4B0 112 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 RPS19BP1Q86WX3 136 aaKnown RBP2.95□□□□□ -1.94
VPS41-212ENST00000482217 MSRB3Q8IXL7 192 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 LINC00311Q8N616 119 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 OR8D4Q8NGM9 314 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 OR4K13Q8NH42 304 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 LCN9Q8WX39 176 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 ELSPBP1Q96BH3 223 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 MS4A6EQ96DS6 147 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 DPH3Q96FX2 82 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 CIB3Q96Q77 187 aaPredicted RBP2.95□□□□□ -1.94
VPS41-212ENST00000482217 TMEM191AQ9H0A3 160 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 SLC25A22Q9H936 323 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 DPM3Q9P2X0 92 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 MYO10Q9HD67 2058 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 PIKFYVEQ9Y2I7 2098 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 ATAD5Q96QE3 1844 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 CCDC141Q6ZP82 1450 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 HCFC1P51610 2035 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 ADAMTS12P58397 1594 aa2.95□□□□□ -1.94
VPS41-212ENST00000482217 SMARCA4P51532 1647 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 POLEQ07864 2286 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 TRAV27A0A087WT01 109 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 IGHV3-35A0A0C4DH35 117 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 IGHV1-58A0A0C4DH39 117 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 PNMA8CA0A1B0GUJ8 204 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 NDUFAF8A1L188 74 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 K7ERJ3 54 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 PHOX2AO14813 284 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 UBE2L6O14933 153 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 GABARAPO95166 117 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 IGLV2-23P01705 113 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 TCRAP04437 139 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 ZNF705DP0CH99 300 aaPredicted RBP2.94□□□□□ -1.94
VPS41-212ENST00000482217 CRYGSP22914 178 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 RPL22P35268 128 aaKnown RBP2.94□□□□□ -1.94
VPS41-212ENST00000482217 ZNF93P35789 620 aaPredicted RBP2.94□□□□□ -1.94
VPS41-212ENST00000482217 TGFBR1P36897 503 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 ZNF136P52737 540 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 CXCL6P80162 114 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 COA6Q5JTJ3 125 aaKnown RBP2.94□□□□□ -1.94
VPS41-212ENST00000482217 PCP2Q8IVA1 136 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 TTC9CQ8N5M4 171 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 OR4A5Q8NH83 315 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 ITLN1Q8WWA0 313 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 VSIG2Q96IQ7 327 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 C2orf50Q96LR7 162 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 PYGO2Q9BRQ0 406 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 TAS2R8Q9NYW2 309 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 CKLFQ9UBR5 152 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 AK3Q9UIJ7 227 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 IER3IP1Q9Y5U9 82 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 NCAPD3P42695 1498 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 KDM5CP41229 1560 aa2.94□□□□□ -1.94
VPS41-212ENST00000482217 YEATS2Q9ULM3 1422 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 HELZP42694 1942 aaKnown RBP2.93□□□□□ -1.94
VPS41-212ENST00000482217 TANC2Q9HCD6 1990 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 OBSL1O75147 1896 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 CAMSAP2Q08AD1 1489 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 KTN1Q86UP2 1357 aaKnown RBP2.93□□□□□ -1.94
VPS41-212ENST00000482217 IGHV1-45A0A0A0MS14 117 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 TRAV19A0A0A6YYK7 116 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 IGKV1-9A0A0C4DH69 117 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 KRTAP16-1A8MUX0 517 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 H7C423 109 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 KLF7O75840 302 aaPredicted RBP2.93□□□□□ -1.94
VPS41-212ENST00000482217 KRASP01116 189 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 NMUP48645 174 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 ARPP19P56211 112 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 HERVK_113P61574 105 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 UBA52P62987 128 aaKnown RBP2.93□□□□□ -1.94
VPS41-212ENST00000482217 HOXC5Q00444 222 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 CLLU1Q5K131 121 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 CASC10Q5T4H9 136 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 C22orf39Q6P5X5 142 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 PDPNQ86YL7 162 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 WFDC5Q8TCV5 224 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 MIEN1Q9BRT3 115 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 HDHD3Q9BSH5 251 aaPredicted RBP2.93□□□□□ -1.94
VPS41-212ENST00000482217 RPRMQ9NS64 109 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 MED9Q9NWA0 146 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 PLXNB1O43157 2135 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 RGS12O14924 1447 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 NAIPQ13075 1403 aa2.93□□□□□ -1.94
VPS41-212ENST00000482217 SCN9AQ15858 1988 aa2.92□□□□□ -1.94
VPS41-212ENST00000482217 NRKQ7Z2Y5 1582 aa2.92□□□□□ -1.94
VPS41-212ENST00000482217 TRPM6Q9BX84 2022 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms