RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PRDX2P32119 198 aa15.33■□□□□ 0.04
CCDC88B-207ENST00000479965 FAM120AOSQ5T036 256 aa15.33■□□□□ 0.04
CCDC88B-207ENST00000479965 RASL11AQ6T310 242 aa15.33■□□□□ 0.04
CCDC88B-207ENST00000479965 LHFPL4Q7Z7J7 247 aa15.33■□□□□ 0.04
CCDC88B-207ENST00000479965 LRRC29Q8WV35 223 aa15.33■□□□□ 0.04
CCDC88B-207ENST00000479965 PEF1Q9UBV8 284 aaKnown RBP15.33■□□□□ 0.04
CCDC88B-207ENST00000479965 CEP192Q8TEP8 1941 aa15.33■□□□□ 0.04
CCDC88B-207ENST00000479965 IGHV3OR15-7A0A075B7D8 119 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 IQCF6A8MYZ5 107 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 HIST1H1EP10412 219 aaKnown RBP15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 IGFBP4P22692 258 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 TMEM251Q8N6I4 163 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 AP1S3Q96PC3 154 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 IFI27L2Q9H2X8 130 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 PEX7O00628 323 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 FOXE3Q13461 319 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 ZNRF1Q8ND25 227 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 MBD6Q96DN6 1003 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 MAP1LC3CQ9BXW4 147 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 KLF13Q9Y2Y9 288 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 AGFG2O95081 481 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 TNFSF15O95150 251 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 RAB30Q15771 203 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 ABHD17BQ5VST6 288 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 BLNKQ8WV28 456 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 SMIM12Q96EX1 92 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 ICE1Q9Y2F5 2266 aa15.32■□□□□ 0.04
CCDC88B-207ENST00000479965 CD5LO43866 347 aa15.31■□□□□ 0.04
CCDC88B-207ENST00000479965 GPR183P32249 361 aa15.31■□□□□ 0.04
CCDC88B-207ENST00000479965 HBBP68871 147 aa15.31■□□□□ 0.04
CCDC88B-207ENST00000479965 IDI2-AS1Q9NZ38 188 aa15.31■□□□□ 0.04
CCDC88B-207ENST00000479965 ARFGEF3Q5TH69 2177 aa15.31■□□□□ 0.04
CCDC88B-207ENST00000479965 OR2J3O76001 311 aa15.31■□□□□ 0.04
CCDC88B-207ENST00000479965 FAM71F2Q6NXP2 309 aa15.31■□□□□ 0.04
CCDC88B-207ENST00000479965 DEFB127Q9H1M4 99 aa15.31■□□□□ 0.04
CCDC88B-207ENST00000479965 TMEM14BQ9NUH8 114 aa15.31■□□□□ 0.04
CCDC88B-207ENST00000479965 SLC25A2Q9BXI2 301 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 CXXC4Q9H2H0 198 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 SCRT2Q9NQ03 307 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 JPT1Q9UK76 154 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 OR10W1Q8NGF6 305 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 PAXXQ9BUH6 204 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 FOXA2Q9Y261 457 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 MRPS17Q9Y2R5 130 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 FAM231BA6NCW3 169 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 COX7A2P2O60397 106 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 CD46P15529 392 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 RPS20P60866 119 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 RTL8BQ17RB0 113 aa15.3■□□□□ 0.04
CCDC88B-207ENST00000479965 WDFY4Q6ZS81 3184 aa15.29■□□□□ 0.04
CCDC88B-207ENST00000479965 HIST1H1AQ02539 215 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-207ENST00000479965 CLEC2AQ6UVW9 174 aa15.29■□□□□ 0.04
CCDC88B-207ENST00000479965 SAA2P0DJI9 122 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-207ENST00000479965 ABI3Q9P2A4 366 aa15.29■□□□□ 0.04
CCDC88B-207ENST00000479965 ARF6P62330 175 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 CHEK1O14757 476 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 SLC25A5P05141 298 aaKnown RBP15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 HTR1DP28221 377 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 BPIFA4PQ86YQ2 179 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 PRR7Q8TB68 274 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 FAM167A-AS1Q96KT0 104 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 H3BTX0 84 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 CRXO43186 299 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 IGLC1P0CG04 106 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 SSBP2P81877 361 aaPredicted RBP15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 FAM231DQ6ZW35 169 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 ZNF329Q86UD4 541 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 FER1L6-AS1Q8NA97 138 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 OR1B1Q8NGR6 318 aa15.28■□□□□ 0.04
CCDC88B-207ENST00000479965 FAM162BQ5T6X4 162 aa15.27■□□□□ 0.04
CCDC88B-207ENST00000479965 CT55Q8WUE5 264 aa15.27■□□□□ 0.04
CCDC88B-207ENST00000479965 HLA-DRB1P01911 266 aa15.27■□□□□ 0.03
CCDC88B-207ENST00000479965 KIR2DS2P43631 304 aa15.27■□□□□ 0.03
CCDC88B-207ENST00000479965 LOXL3P58215 753 aa15.27■□□□□ 0.03
CCDC88B-207ENST00000479965 FAM90A1Q86YD7 464 aa15.27■□□□□ 0.03
CCDC88B-207ENST00000479965 RAB37Q96AX2 223 aa15.27■□□□□ 0.03
CCDC88B-207ENST00000479965 ZNF430Q9H8G1 570 aaPredicted RBP15.27■□□□□ 0.03
CCDC88B-207ENST00000479965 HILPDAQ9Y5L2 63 aa15.27■□□□□ 0.03
CCDC88B-207ENST00000479965 CT45A1Q5HYN5 189 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 CT45A3Q8NHU0 189 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 PTPRBP23467 1997 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 H3BUT2 72 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 LIPFP07098 398 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 TEX45Q8NA69 505 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 TMEM116Q8NCL8 245 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 OR2Z1Q8NG97 314 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 DDB2Q92466 427 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 CALYQ9NYX4 217 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 ZFHX4Q86UP3 3567 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 HEATR1Q9H583 2144 aaKnown RBP15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 IGKV1-16P04430 117 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 CXCL12P48061 93 aa15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 LINC00322Q6ZN03 302 aaPredicted RBP15.26■□□□□ 0.03
CCDC88B-207ENST00000479965 A0A1B0GXF2 115 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 TMEM177Q53S58 311 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 C10orf113Q5VZT2 155 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 RND1Q92730 232 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 CHCHD1Q96BP2 118 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 TMUB1Q9BVT8 246 aa15.25■□□□□ 0.03
CCDC88B-207ENST00000479965 ZNRD1Q9P1U0 126 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms