RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 GNRHRP30968 328 aa12.31□□□□□ -0.44
VIM-204ENST00000478746 RPS19P39019 145 aaKnown RBP12.31□□□□□ -0.44
VIM-204ENST00000478746 CROCCP3Q8IVE0 287 aa12.31□□□□□ -0.44
VIM-204ENST00000478746 FCAMRQ8WWV6 532 aa12.31□□□□□ -0.44
VIM-204ENST00000478746 SMIM31A0A1B0GVY4 71 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 A0A1W2PS18 150 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 DBX1A6NMT0 343 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 C16orf90A8MZG2 172 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 PGLYRP1O75594 196 aaPredicted RBP12.3□□□□□ -0.44
VIM-204ENST00000478746 NPBWR1P48145 328 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 HERV-K104P61576 105 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 ZNF600Q6ZNG1 722 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 OR5AP2Q8NGF4 316 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 ZFAND3Q9H8U3 227 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 NDUFA13Q9P0J0 144 aa12.3□□□□□ -0.44
VIM-204ENST00000478746 A0A0A6YYH2 397 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 A6NJ64 397 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 H3BMQ9 156 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 RLN1P04808 185 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 CBX5P45973 191 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 SCAND1P57086 179 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 IDNKQ5T6J7 187 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 OR5H6Q8NGV6 325 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 TSC22D3Q99576 134 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 AUNIPQ9H7T9 357 aa12.29□□□□□ -0.44
VIM-204ENST00000478746 RSL24D1Q9UHA3 163 aaKnown RBP12.29□□□□□ -0.44
VIM-204ENST00000478746 SPCS2Q15005 226 aa12.28□□□□□ -0.44
VIM-204ENST00000478746 RNF212Q495C1 297 aa12.28□□□□□ -0.44
VIM-204ENST00000478746 ZNF114Q8NC26 417 aa12.28□□□□□ -0.44
VIM-204ENST00000478746 SLC25A38Q96DW6 304 aa12.28□□□□□ -0.44
VIM-204ENST00000478746 FAM210BQ96KR6 192 aa12.28□□□□□ -0.44
VIM-204ENST00000478746 RAB40CQ96S21 281 aa12.28□□□□□ -0.44
VIM-204ENST00000478746 RBM38Q9H0Z9 239 aaKnown RBP12.28□□□□□ -0.44
VIM-204ENST00000478746 DIABLOQ9NR28 239 aa12.28□□□□□ -0.44
VIM-204ENST00000478746 A0A1B0GU03 582 aa12.27□□□□□ -0.45
VIM-204ENST00000478746 ZNF701M0R085 212 aaPredicted RBP12.27□□□□□ -0.45
VIM-204ENST00000478746 TMEM127O75204 238 aa12.27□□□□□ -0.45
VIM-204ENST00000478746 TMEM50AO95807 157 aa12.27□□□□□ -0.45
VIM-204ENST00000478746 SPART-AS1P0CW21 52 aa12.27□□□□□ -0.45
VIM-204ENST00000478746 RORCP51449 518 aa12.27□□□□□ -0.45
VIM-204ENST00000478746 NUTF2P61970 127 aaKnown RBP12.27□□□□□ -0.45
VIM-204ENST00000478746 ERHP84090 104 aaKnown RBP12.27□□□□□ -0.45
VIM-204ENST00000478746 C1QTNF4Q9BXJ3 329 aa12.27□□□□□ -0.45
VIM-204ENST00000478746 EHFQ9NZC4 300 aa12.27□□□□□ -0.45
VIM-204ENST00000478746 XCL2Q9UBD3 114 aa12.27□□□□□ -0.45
VIM-204ENST00000478746 MEIS3P1A6NDR6 274 aa12.26□□□□□ -0.45
VIM-204ENST00000478746 P2RY1P47900 373 aa12.26□□□□□ -0.45
VIM-204ENST00000478746 DHRS11Q6UWP2 260 aa12.26□□□□□ -0.45
VIM-204ENST00000478746 CMTM1Q8IZ96 169 aa12.26□□□□□ -0.45
VIM-204ENST00000478746 OR4A16Q8NH70 328 aa12.26□□□□□ -0.45
VIM-204ENST00000478746 DCANP1Q8TF63 244 aa12.26□□□□□ -0.45
VIM-204ENST00000478746 METTL26Q96S19 204 aa12.26□□□□□ -0.45
VIM-204ENST00000478746 LRP1BQ9NZR2 4599 aa12.25□□□□□ -0.45
VIM-204ENST00000478746 CRYBB3P26998 211 aa12.25□□□□□ -0.45
VIM-204ENST00000478746 EMP1P54849 157 aa12.25□□□□□ -0.45
VIM-204ENST00000478746 PRCDQ00LT1 54 aa12.25□□□□□ -0.45
VIM-204ENST00000478746 DHRS2Q13268 280 aa12.25□□□□□ -0.45
VIM-204ENST00000478746 Q8N1X5 172 aa12.25□□□□□ -0.45
VIM-204ENST00000478746 AP3S1Q92572 193 aa12.25□□□□□ -0.45
VIM-204ENST00000478746 NARS2Q96I59 477 aaKnown RBP12.25□□□□□ -0.45
VIM-204ENST00000478746 ZNF2Q9BSG1 426 aaPredicted RBP12.25□□□□□ -0.45
VIM-204ENST00000478746 IFT46Q9NQC8 304 aa12.25□□□□□ -0.45
VIM-204ENST00000478746 ZNF182P17025 639 aaPredicted RBP12.24□□□□□ -0.45
VIM-204ENST00000478746 RFX2P48378 723 aa12.24□□□□□ -0.45
VIM-204ENST00000478746 HSPE1P61604 102 aaKnown RBP12.24□□□□□ -0.45
VIM-204ENST00000478746 TNP2Q05952 138 aa12.24□□□□□ -0.45
VIM-204ENST00000478746 PSMG4Q5JS54 123 aa12.24□□□□□ -0.45
VIM-204ENST00000478746 DYNC2LI1Q8TCX1 351 aa12.24□□□□□ -0.45
VIM-204ENST00000478746 BATF3Q9NR55 127 aa12.24□□□□□ -0.45
VIM-204ENST00000478746 CCDC59Q9P031 241 aaKnown RBP12.24□□□□□ -0.45
VIM-204ENST00000478746 HERC1Q15751 4861 aa12.24□□□□□ -0.45
VIM-204ENST00000478746 TMEM189A5PLL7 270 aa12.23□□□□□ -0.45
VIM-204ENST00000478746 HELTA6NFD8 242 aa12.23□□□□□ -0.45
VIM-204ENST00000478746 EIF2B2P49770 351 aaKnown RBP12.23□□□□□ -0.45
VIM-204ENST00000478746 PPP5CP53041 499 aa12.23□□□□□ -0.45
VIM-204ENST00000478746 MZT2AQ6P582 158 aa12.23□□□□□ -0.45
VIM-204ENST00000478746 H2BFWTQ7Z2G1 175 aa12.23□□□□□ -0.45
VIM-204ENST00000478746 TMEM230Q96A57 120 aa12.23□□□□□ -0.45
VIM-204ENST00000478746 NEU1Q99519 415 aa12.23□□□□□ -0.45
VIM-204ENST00000478746 NACAE9PAV3 2078 aa12.23□□□□□ -0.45
VIM-204ENST00000478746 GPR31O00270 319 aa12.22□□□□□ -0.45
VIM-204ENST00000478746 SNCAP37840 140 aa12.22□□□□□ -0.45
VIM-204ENST00000478746 SCRT2Q9NQ03 307 aa12.22□□□□□ -0.45
VIM-204ENST00000478746 COMMD3Q9UBI1 195 aa12.22□□□□□ -0.45
VIM-204ENST00000478746 SMIM9A6NGZ8 99 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 A6NHS1 94 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 H3BMM0 161 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 PMP2P02689 132 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 HTN3P15516 51 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 SAMD12Q8N8I0 201 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 OR5H2Q8NGV7 314 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 OR6F1Q8NGZ6 308 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 SEC22AQ96IW7 307 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 NIPSNAP3BQ9BS92 247 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 FXYD6Q9H0Q3 95 aa12.21□□□□□ -0.45
VIM-204ENST00000478746 S100GP29377 79 aa12.2□□□□□ -0.46
VIM-204ENST00000478746 AP2S1P53680 142 aaPredicted RBP12.2□□□□□ -0.46
VIM-204ENST00000478746 TAS2R46P59540 309 aa12.2□□□□□ -0.46
VIM-204ENST00000478746 SNRPD3P62318 126 aaKnown RBP12.2□□□□□ -0.46
VIM-204ENST00000478746 SPINK9Q5DT21 86 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms