RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ZNF580Q9UK33 172 aa10.12□□□□□ -0.79
VPS13D-205ENST00000473099 VPREB3Q9UKI3 123 aa10.12□□□□□ -0.79
VPS13D-205ENST00000473099 KLK9Q9UKQ9 250 aa10.12□□□□□ -0.79
VPS13D-205ENST00000473099 C2CD3Q4AC94 2353 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 IGLV11-55A0A075B6I3 123 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 RAB19A4D1S5 217 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 ATP6V1G1O75348 118 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 SCGB2A1O75556 95 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 MT-CO2P00403 227 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 AMY1AP04745 511 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 EGR2P11161 476 aaPredicted RBP10.11□□□□□ -0.79
VPS13D-205ENST00000473099 M6PRP20645 277 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 KRTAP1-1Q07627 177 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 ZNF616Q08AN1 781 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 UNQ5815/PRO19632Q6UWF5 114 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 SLC35E3Q7Z769 313 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 COMMD7Q86VX2 200 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 SLC7A5P1Q8MH63 180 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 EIF4E3Q8N5X7 224 aaKnown RBP10.11□□□□□ -0.79
VPS13D-205ENST00000473099 ACY3Q96HD9 319 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 CXorf58Q96LI9 332 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 C19orf24Q9BVV8 132 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 SOX21Q9Y651 276 aaPredicted RBP10.11□□□□□ -0.79
VPS13D-205ENST00000473099 PXMP4Q9Y6I8 212 aa10.11□□□□□ -0.79
VPS13D-205ENST00000473099 TRAV1-1A0A0B4J248 108 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 MDFIC2A0A1B0GVS7 189 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 I3L2K1 104 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 IGHV4-59P01825 116 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 IGF1P05019 195 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 FABP1P07148 127 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 H2AFB1P0C5Y9 115 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 S100A1P23297 94 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 RND2P52198 227 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 ELLP55199 621 aaPredicted RBP10.1□□□□□ -0.79
VPS13D-205ENST00000473099 B2MP61769 119 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 OR4X1Q8NH49 305 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 MARC2Q969Z3 335 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 ZNF48Q96MX3 618 aaPredicted RBP10.1□□□□□ -0.79
VPS13D-205ENST00000473099 TRGV9Q99603 122 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 ACTR3CQ9C0K3 210 aaPredicted RBP10.1□□□□□ -0.79
VPS13D-205ENST00000473099 YAE1D1Q9NRH1 226 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 RPRMQ9NS64 109 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 SLC45A2Q9UMX9 530 aa10.1□□□□□ -0.79
VPS13D-205ENST00000473099 TRAV30A0A087WSZ9 112 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 TRAV41A0A0B4J266 112 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 CTXND1A0A1B0GTU2 59 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 TCRBV4S1A1TA0A5B7 111 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 ZFP92A6NM28 416 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 H3BUA1 57 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 AP4M1O00189 453 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 BRI3O95415 125 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 OR10J1P30954 320 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 NPBWR1P48145 328 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 PRR20EP86478 221 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 PRR20CP86479 221 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 PRR20DP86480 221 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 PRR20BP86481 221 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 PRR20AP86496 221 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 ECSCRQ19T08 205 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 C9orf152Q5JTZ5 239 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 ACSM6Q6P461 480 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 UQCC3Q6UW78 93 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 CYP2G1PQ6ZSU1 146 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 STPG3Q8N7X2 389 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 OR10G4Q8NGN3 311 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 OR10G9Q8NGN4 311 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 OR10G7Q8NGN6 311 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 OR2T6Q8NHC8 308 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 MBD3L1Q8WWY6 194 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 NPIPB3Q92617 1050 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 FANCD2OSQ96PS1 177 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 RNF2Q99496 336 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 TXN2Q99757 166 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 HRH4Q9H3N8 390 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 SLC39A9Q9NUM3 307 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 GAR1Q9NY12 217 aaKnown RBP10.09□□□□□ -0.79
VPS13D-205ENST00000473099 DMRT1Q9Y5R6 373 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 RFNGQ9Y644 331 aa10.09□□□□□ -0.79
VPS13D-205ENST00000473099 IGKV1OR2-108A0A075B7D4 117 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 SEC14L6B5MCN3 397 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 K7EIM0 57 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 FCGR2BP31994 310 aaPredicted RBP10.08□□□□□ -0.8
VPS13D-205ENST00000473099 MFAP4P55083 255 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 MLANAQ16655 118 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 C19orf54Q5BKX5 351 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 MIC13Q5XKP0 118 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 RBMS3Q6XE24 437 aaKnown RBP10.08□□□□□ -0.8
VPS13D-205ENST00000473099 OR5T1Q8NG75 326 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 VN1R17PQ8TDU5 208 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 ATP6V0BQ99437 205 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 ACANP16112 2415 aa10.08□□□□□ -0.8
VPS13D-205ENST00000473099 TRBV9A0A0B4J1U6 114 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 A0A1W2PPV4 95 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 MFSD2BA6NFX1 497 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 CLN5O75503 358 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 FOSL1P15407 271 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 CDC34P49427 236 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-205ENST00000473099 FHITP49789 147 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 RHOBP62745 196 aa10.07□□□□□ -0.8
VPS13D-205ENST00000473099 C19orf35Q6ZS72 473 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms