RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 PUS1Q9Y606 427 aaKnown RBP eCLIP14.54□□□□□ -0.08
COL9A3-210ENST00000472880 C3orf85A0A1B0GTC6 90 aa14.53□□□□□ -0.08
COL9A3-210ENST00000472880 HOXA1P49639 335 aaPredicted RBP14.53□□□□□ -0.08
COL9A3-210ENST00000472880 SUB1P53999 127 aaKnown RBP eCLIP14.53□□□□□ -0.08
COL9A3-210ENST00000472880 TRIM16LQ309B1 348 aa14.53□□□□□ -0.08
COL9A3-210ENST00000472880 OR4D10Q8NGI6 311 aa14.53□□□□□ -0.08
COL9A3-210ENST00000472880 RARRES2Q99969 163 aa14.53□□□□□ -0.08
COL9A3-210ENST00000472880 TMEM231Q9H6L2 316 aa14.53□□□□□ -0.08
COL9A3-210ENST00000472880 VSIRQ9H7M9 311 aa14.53□□□□□ -0.08
COL9A3-210ENST00000472880 COPZ2Q9P299 210 aa14.53□□□□□ -0.08
COL9A3-210ENST00000472880 INS-IGF2F8WCM5 200 aa14.52□□□□□ -0.09
COL9A3-210ENST00000472880 DNASE2O00115 360 aaPredicted RBP14.52□□□□□ -0.09
COL9A3-210ENST00000472880 RAB3DO95716 219 aa14.52□□□□□ -0.09
COL9A3-210ENST00000472880 P0C879 139 aa14.52□□□□□ -0.09
COL9A3-210ENST00000472880 RPL11P62913 178 aaKnown RBP14.52□□□□□ -0.09
COL9A3-210ENST00000472880 STEAP1BQ6NZ63 245 aa14.52□□□□□ -0.09
COL9A3-210ENST00000472880 CCDC71LQ8N9Z2 235 aa14.52□□□□□ -0.09
COL9A3-210ENST00000472880 RNASE11Q8TAA1 199 aaKnown RBP14.52□□□□□ -0.09
COL9A3-210ENST00000472880 PHLDA1Q8WV24 401 aaPredicted RBP14.52□□□□□ -0.09
COL9A3-210ENST00000472880 ZFAND3Q9H8U3 227 aa14.52□□□□□ -0.09
COL9A3-210ENST00000472880 ENY2Q9NPA8 101 aa14.52□□□□□ -0.09
COL9A3-210ENST00000472880 A0A0B4J293 547 aa14.51□□□□□ -0.09
COL9A3-210ENST00000472880 IGHV3-66A0A0C4DH42 116 aa14.51□□□□□ -0.09
COL9A3-210ENST00000472880 SCGB2A1O75556 95 aa14.51□□□□□ -0.09
COL9A3-210ENST00000472880 CA1P00915 261 aaPredicted RBP14.51□□□□□ -0.09
COL9A3-210ENST00000472880 APOHP02749 345 aaPredicted RBP14.51□□□□□ -0.09
COL9A3-210ENST00000472880 TNFSF8P32971 234 aa14.51□□□□□ -0.09
COL9A3-210ENST00000472880 ZFAND1Q8TCF1 268 aa14.51□□□□□ -0.09
COL9A3-210ENST00000472880 RRNAD1Q96FB5 475 aaKnown RBP14.51□□□□□ -0.09
COL9A3-210ENST00000472880 MS4A6AQ9H2W1 248 aa14.51□□□□□ -0.09
COL9A3-210ENST00000472880 RSL24D1Q9UHA3 163 aaKnown RBP14.51□□□□□ -0.09
COL9A3-210ENST00000472880 DFFBO76075 338 aa14.5□□□□□ -0.09
COL9A3-210ENST00000472880 TMEM50AO95807 157 aa14.5□□□□□ -0.09
COL9A3-210ENST00000472880 RNASE2P10153 161 aaKnown RBP14.5□□□□□ -0.09
COL9A3-210ENST00000472880 OPRK1P41145 380 aa14.5□□□□□ -0.09
COL9A3-210ENST00000472880 DEFB131AP59861 70 aa14.5□□□□□ -0.09
COL9A3-210ENST00000472880 SCGB2B2Q4G0G5 96 aa14.5□□□□□ -0.09
COL9A3-210ENST00000472880 OR11H2Q8NH07 326 aa14.5□□□□□ -0.09
COL9A3-210ENST00000472880 SOSTQ9BQB4 213 aa14.5□□□□□ -0.09
COL9A3-210ENST00000472880 MFFQ9GZY8 342 aa14.5□□□□□ -0.09
COL9A3-210ENST00000472880 C11orf68Q9H3H3 251 aaKnown RBP14.5□□□□□ -0.09
COL9A3-210ENST00000472880 TRAV2A0A0B4J234 112 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 A0A1B0GU03 582 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 FABP12A6NFH5 140 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 GSTZ1O43708 216 aaPredicted RBP14.49□□□□□ -0.09
COL9A3-210ENST00000472880 ETV6P41212 452 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 MEF2DQ14814 521 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 SP6Q3SY56 376 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 LEMD1Q68G75 181 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 PVRIGQ6DKI7 326 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 FAAP20Q6NZ36 180 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 OR13C8Q8NGS7 320 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 TERB2Q8NHR7 220 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 RABAC1Q9UI14 185 aa14.49□□□□□ -0.09
COL9A3-210ENST00000472880 A0A1W2PS18 150 aa14.48□□□□□ -0.09
COL9A3-210ENST00000472880 ZNF701M0R085 212 aaPredicted RBP14.48□□□□□ -0.09
COL9A3-210ENST00000472880 B3GALNT1O75752 331 aa14.48□□□□□ -0.09
COL9A3-210ENST00000472880 NPPCP23582 126 aa14.48□□□□□ -0.09
COL9A3-210ENST00000472880 UCP1P25874 307 aa14.48□□□□□ -0.09
COL9A3-210ENST00000472880 LILRB2Q8N423 598 aa14.48□□□□□ -0.09
COL9A3-210ENST00000472880 C11orf45Q8TAV5 145 aa14.48□□□□□ -0.09
COL9A3-210ENST00000472880 METTL26Q96S19 204 aa14.48□□□□□ -0.09
COL9A3-210ENST00000472880 FBXL17Q9UF56 701 aa14.48□□□□□ -0.09
COL9A3-210ENST00000472880 A0A0G2JRQ6 117 aa14.47□□□□□ -0.09
COL9A3-210ENST00000472880 CLN5O75503 358 aa14.47□□□□□ -0.09
COL9A3-210ENST00000472880 AKAIN1P0CW23 69 aa14.47□□□□□ -0.09
COL9A3-210ENST00000472880 TMEM187Q14656 261 aa14.47□□□□□ -0.09
COL9A3-210ENST00000472880 RBMS2Q15434 407 aaKnown RBP14.47□□□□□ -0.09
COL9A3-210ENST00000472880 STHQ8IWL8 128 aa14.47□□□□□ -0.09
COL9A3-210ENST00000472880 FAM24BQ8N5W8 94 aa14.47□□□□□ -0.09
COL9A3-210ENST00000472880 OR4C16Q8NGL9 310 aa14.47□□□□□ -0.09
COL9A3-210ENST00000472880 MARCH1Q8TCQ1 289 aa14.47□□□□□ -0.09
COL9A3-210ENST00000472880 NARS2Q96I59 477 aaKnown RBP14.47□□□□□ -0.09
COL9A3-210ENST00000472880 FNDC4Q9H6D8 234 aaPredicted RBP14.47□□□□□ -0.09
COL9A3-210ENST00000472880 ANKRD20A5PA0PJZ0 165 aa14.46□□□□□ -0.09
COL9A3-210ENST00000472880 DISC1C4P0D8 188 aa14.46□□□□□ -0.09
COL9A3-210ENST00000472880 NANOS2P60321 138 aaKnown RBP14.46□□□□□ -0.09
COL9A3-210ENST00000472880 STXBP6Q8NFX7 210 aa14.46□□□□□ -0.09
COL9A3-210ENST00000472880 OR4X1Q8NH49 305 aa14.46□□□□□ -0.09
COL9A3-210ENST00000472880 TMEM230Q96A57 120 aa14.46□□□□□ -0.09
COL9A3-210ENST00000472880 MRPL36Q9P0J6 103 aaKnown RBP14.46□□□□□ -0.09
COL9A3-210ENST00000472880 C14orf166Q9Y224 244 aaKnown RBP14.46□□□□□ -0.09
COL9A3-210ENST00000472880 IFNA4P05014 189 aa14.45□□□□□ -0.1
COL9A3-210ENST00000472880 LGALS9CQ6DKI2 356 aa14.45□□□□□ -0.1
COL9A3-210ENST00000472880 FAM219AQ8IW50 185 aa14.45□□□□□ -0.1
COL9A3-210ENST00000472880 RPS10-NUDT3A0A1W2PQS6 291 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 DEFB4AO15263 64 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 OR5AC1P0C628 307 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 CRYBB3P26998 211 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 HTR2BP41595 481 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 P2RY1P47900 373 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 SPCS3P61009 180 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 BSXQ3C1V8 233 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 RPP25LQ8N5L8 163 aaKnown RBP14.44□□□□□ -0.1
COL9A3-210ENST00000472880 GRAMD2BQ96HH9 432 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 TMEM222Q9H0R3 208 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 V9GYH0 126 aa14.44□□□□□ -0.1
COL9A3-210ENST00000472880 TRAV30A0A087WSZ9 112 aa14.43□□□□□ -0.1
COL9A3-210ENST00000472880 TEX13DA0A0J9YY54 714 aaPredicted RBP14.43□□□□□ -0.1
COL9A3-210ENST00000472880 K7EQG2 157 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms