RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 TRAV14DV4A0A0A6YYC5 116 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 IGHV7-4-1A0A0J9YVY3 117 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 CHEK1O14757 476 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 HTR2BP41595 481 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 CCDC190Q86UF4 302 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 TOMM5Q8N4H5 51 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 TMEM116Q8NCL8 245 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 DEDD2Q8WXF8 326 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 RHPN1-AS1Q9BWJ2 59 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 RYR2Q92736 4967 aa8.93□□□□□ -0.98
SYNE1-221ENST00000472563 A0A0B4J2A0 478 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 OR4C46A6NHA9 309 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 TMEM50AO95807 157 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 SULT1A3P0DMM9 295 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 SULT1A4P0DMN0 295 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 LYL1P12980 280 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 AKR1C4P17516 323 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 SUPT4H1P63272 117 aaKnown RBP8.92□□□□□ -0.98
SYNE1-221ENST00000472563 SRPXP78539 464 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 ZNF79Q15937 498 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 CASC10Q5T4H9 136 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 TOMM20LQ6UXN7 152 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 ZNF600Q6ZNG1 722 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 OR4X1Q8NH49 305 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 RNF2Q99496 336 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 FAM110AQ9BQ89 295 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 GINS3Q9BRX5 216 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 GGTLC1Q9BX51 225 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 FNDC4Q9H6D8 234 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-221ENST00000472563 HEYLQ9NQ87 328 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-221ENST00000472563 SHPKQ9UHJ6 478 aa8.92□□□□□ -0.98
SYNE1-221ENST00000472563 PIGBOS1A0A0B4J2F0 54 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 CLN5O75503 358 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 ANXA3P12429 323 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 OPRK1P41145 380 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 MLANAQ16655 118 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 C2orf83Q53S99 150 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 NMSQ5H8A3 153 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 LGI3Q8N145 548 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 RETNQ9HD89 108 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 PRR13Q9NZ81 148 aa8.91□□□□□ -0.98
SYNE1-221ENST00000472563 MRPL36Q9P0J6 103 aaKnown RBP8.91□□□□□ -0.98
SYNE1-221ENST00000472563 PUS1Q9Y606 427 aaKnown RBP eCLIP8.91□□□□□ -0.98
SYNE1-221ENST00000472563 LOC102724200A0A096LPH7 203 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-221ENST00000472563 RPS10-NUDT3A0A1W2PQS6 291 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 CEBPZOSA8MTT3 80 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 SCGB2A1O75556 95 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 CD5P06127 495 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 BMI1P35226 326 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 CCR6P51684 374 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 ODF3L2Q3SX64 289 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 SPANXN2Q5MJ10 180 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 FAM90A2PQ658T7 463 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 LYZL2Q7Z4W2 148 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 SLC24A4Q8NFF2 622 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 RNASEH2CQ8TDP1 164 aaKnown RBP8.9□□□□□ -0.98
SYNE1-221ENST00000472563 SLC25A21Q9BQT8 299 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-221ENST00000472563 VSIRQ9H7M9 311 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 ZFAND3Q9H8U3 227 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 HSPB7Q9UBY9 170 aa8.9□□□□□ -0.98
SYNE1-221ENST00000472563 TRAV30A0A087WSZ9 112 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 IGHV3-49A0A0A0MS15 119 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 A0A1B0GU03 582 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 DUXBA0A1W2PPF3 345 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 IGKV1-17P01599 117 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 SLC25A4P12235 298 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 CMC4P56277 68 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-221ENST00000472563 TNFRSF9Q07011 255 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 SMCO1Q147U7 214 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 TMEM128Q5BJH2 165 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 TMED4Q7Z7H5 227 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 NOXA1Q86UR1 476 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 TMEM170AQ8WVE7 144 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 SRRQ9GZT4 340 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 UBQLN2Q9UHD9 624 aa8.89□□□□□ -0.99
SYNE1-221ENST00000472563 IGHV3OR16-13A0A075B7E8 117 aa8.88□□□□□ -0.99
SYNE1-221ENST00000472563 IGHV3-74A0A0B4J1X5 117 aa8.88□□□□□ -0.99
SYNE1-221ENST00000472563 NPPCP23582 126 aa8.88□□□□□ -0.99
SYNE1-221ENST00000472563 NPY1RP25929 384 aa8.88□□□□□ -0.99
SYNE1-221ENST00000472563 ATP5IP56385 69 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-221ENST00000472563 PAFAH1B2P68402 229 aa8.88□□□□□ -0.99
SYNE1-221ENST00000472563 PRSS54Q6PEW0 395 aa8.88□□□□□ -0.99
SYNE1-221ENST00000472563 LRTM2Q8N967 370 aa8.88□□□□□ -0.99
SYNE1-221ENST00000472563 U3KQ87 197 aa8.88□□□□□ -0.99
SYNE1-221ENST00000472563 KIR2DL5BA0A0G2JN68 375 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 KIR2DL5BA0A0G2JPC4 375 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 UBE2CO00762 179 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 NXPH3O95157 252 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 IFNA10P01566 189 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 APOHP02749 345 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-221ENST00000472563 IGLC1P0CG04 106 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 RND2P52198 227 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 APOC4P55056 127 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 YPEL3P61236 119 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-221ENST00000472563 TIGITQ495A1 244 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 ETFRF1Q6IPR1 90 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 TCF24Q7RTU0 167 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 KIR2DL5AQ8N109 375 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 LILRB2Q8N423 598 aa8.87□□□□□ -0.99
SYNE1-221ENST00000472563 OR1S2Q8NGQ3 325 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms