RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 UNQ5815/PRO19632Q6UWF5 114 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 C1orf210Q8IVY1 113 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 TEX45Q8NA69 505 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 PLEKHB2Q96CS7 222 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 Q9H3A6 140 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 A0A1W2PR80 420 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 HOXB3P14651 431 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-209ENST00000472056 SPRED2Q7Z698 418 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 SCO2A0A1W2PP80 73 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 FAM74A4Q5TZK3 123 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 IFI27L1Q96BM0 104 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 C18orf15Q96N68 181 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 B9A039 149 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 UPK2O00526 184 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 CGAP01215 116 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 EAF1Q96JC9 268 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-209ENST00000472056 BRWD3Q6RI45 1802 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 FOXH1O75593 365 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 SCARF2Q96GP6 870 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-209ENST00000472056 IGKV3D-11A0A0A0MRZ8 115 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 IGKV3-11P04433 115 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 ZPLD1Q8TCW7 415 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 RTBDNQ9BSG5 229 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-209ENST00000472056 C2CD4DB7Z1M9 353 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 SP9P0CG40 484 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 PIMREGQ9BSJ6 248 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 MRPS18CQ9Y3D5 142 aaKnown RBP11.25□□□□□ -0.61
COL6A3-209ENST00000472056 C15orf61A6NNL5 157 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 RAMP1O60894 148 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 EIF4EBP2Q13542 120 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-209ENST00000472056 IGKV3D-15A0A087WSY6 115 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 TRAV12-3A0A0B4J271 114 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 PIN1P1O15428 100 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 IGKV3-15P01624 115 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 GLRXP35754 106 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 PRSS53Q2L4Q9 553 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 ZNF362Q5T0B9 420 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-209ENST00000472056 TRAV24A0A0B4J272 114 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 PSMB11A5LHX3 300 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 IGKV1D-16P01601 117 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 ZNF385AQ96PM9 386 aaKnown RBP11.25□□□□□ -0.61
COL6A3-209ENST00000472056 YPEL1O60688 119 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 APELAP0DMC3 54 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 ADMP35318 185 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 YPEL2Q96QA6 119 aa11.25□□□□□ -0.61
COL6A3-209ENST00000472056 FOXI3A8MTJ6 420 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-209ENST00000472056 NDUFA3O95167 84 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 TRIP6Q15654 476 aaKnown RBP11.24□□□□□ -0.61
COL6A3-209ENST00000472056 ZNF525Q8N782 197 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 NPIPB3Q92617 1050 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 RSPO3Q9BXY4 272 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-209ENST00000472056 MRPL20Q9BYC9 149 aaKnown RBP11.24□□□□□ -0.61
COL6A3-209ENST00000472056 FAM90A27PA6NNH2 459 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 RFLNBQ8N5W9 214 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 KLF14Q8TD94 323 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-209ENST00000472056 PILRAQ9UKJ1 303 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 IGHV3OR15-7A0A075B7D8 119 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 FOXS1O43638 330 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 FOXA3P55318 350 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-209ENST00000472056 Q6ZT83 130 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 PILRBQ9UKJ0 227 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 TEX38Q6PEX7 206 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 HIST1H4AP62805 103 aaKnown RBP11.24□□□□□ -0.61
COL6A3-209ENST00000472056 MESP2Q0VG99 397 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 FHL5Q5TD97 284 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 OR10W1Q8NGF6 305 aa11.24□□□□□ -0.61
COL6A3-209ENST00000472056 IGHV1-45A0A0A0MS14 117 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 PLAUP00749 431 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 ABHD12Q8N2K0 398 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 TCRBV4S1A1TA0A5B7 111 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 COLCA2A8K830 154 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 TMEM229AB2RXF0 380 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 CD5LO43866 347 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 IGFBP3P17936 291 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-209ENST00000472056 REG1BP48304 166 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 ACP7Q6ZNF0 438 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 LINC00312Q9Y6C7 94 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 C5orf67F2Z3F1 127 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 F8W1H4 67 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 FAM19A2Q8N3H0 131 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 TNFRSF14Q92956 283 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 SLC25A39Q9BZJ4 359 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-209ENST00000472056 GFRA4Q9GZZ7 299 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 EXPH5Q8NEV8 1989 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 MMP23AO75900 390 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 NEGR1Q7Z3B1 354 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 ABHD17AQ96GS6 310 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 KLF12Q9Y4X4 402 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 TANC1Q9C0D5 1861 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 ZFP36L2P47974 494 aaKnown RBP11.23□□□□□ -0.61
COL6A3-209ENST00000472056 CGB1A6NKQ9 187 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 TNFRSF6BO95407 300 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 CSRP3P50461 194 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 KLF17Q5JT82 389 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-209ENST00000472056 ZAR1Q86SH2 424 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 SSBP3Q9BWW4 388 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-209ENST00000472056 C1QTNF5Q9BXJ0 243 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 THSD7AQ9UPZ6 1657 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 C9orf172C9J069 976 aa11.23□□□□□ -0.61
COL6A3-209ENST00000472056 AMBPP02760 352 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms