RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	FAM236D	A0A1B0GTK5	79 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR2J2	O76002	312 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	CNIH1	O95406	144 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	CRYZL1	O95825	349 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	TCL1B	O95988	128 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	TCRB	P04435	133 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	RPS17	P08708	135 aa	Known RBP	0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	RBP1	P09455	135 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	FAM236C	P0DP71	79 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	FKBP2	P26885	142 aa	Known RBP	0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	LSM6	P62312	80 aa	Known RBP	0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	EDDM3A	Q14507	147 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	SPANXN5	Q5MJ07	72 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	BPIFA4P	Q86YQ2	179 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR6V1	Q8N148	313 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	LINC00471	Q8N535	108 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	SIGLECL1	Q8N7X8	197 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	MNS1	Q8NEH6	495 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR4C6	Q8NH72	309 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	BORCS7	Q96B45	105 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	GINS4	Q9BRT9	223 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	TRABD	Q9H4I3	376 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	SLC39A9	Q9NUM3	307 aa		0.99	□□□□□ -2.25
PTCD3-209	ENST00000472044	DOCK3	Q8IZD9	2030 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	MYH7B	A7E2Y1	1941 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	CEP192	Q8TEP8	1941 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044		A0A087WUJ7	227 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	TRAV14DV4	A0A0A6YYC5	116 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	PIR	O00625	290 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	CRYGA	P11844	174 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	MIF	P14174	115 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	MYL6	P60660	151 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	AES	Q08117	197 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	ITGB3BP	Q13352	177 aa	Predicted RBP	0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	RHEB	Q15382	184 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	TEX36	Q5VZQ5	186 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	DPPA3	Q6W0C5	159 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	PHF13	Q86YI8	300 aa	Predicted RBP	0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	HIST3H2BB	Q8N257	126 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	C12orf45	Q8N5I9	185 aa	Predicted RBP	0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR4E2	Q8NGC2	313 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	DNAJC9	Q8WXX5	260 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	CMSS1	Q9BQ75	279 aa	Known RBP	0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	SLC50A1	Q9BRV3	221 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	DCSTAMP	Q9H295	470 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	UCK1	Q9HA47	277 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	KIF1B	O60333	1816 aa		0.98	□□□□□ -2.25
PTCD3-209	ENST00000472044	hADV38S2	A0JD32	116 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	SMIM9	A6NGZ8	99 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR2T1	O43869	369 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	FADS1	O60427	444 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR2B3	O76000	313 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	SPI1	P17947	270 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	CDKN2C	P42773	168 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	HIST1H3A	P68431	136 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	H3F3A	P84243	136 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	PDE6H	Q13956	83 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	CDK10	Q15131	360 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	KHDC3L	Q587J8	217 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	GDPD1	Q8N9F7	314 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR5A1	Q8NGJ0	315 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	CT55	Q8WUE5	264 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	RNF122	Q9H9V4	155 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	SNURF	Q9Y675	71 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	TNRC6A	Q8NDV7	1962 aa	Known RBP	0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	SCN10A	Q9Y5Y9	1956 aa		0.97	□□□□□ -2.25
PTCD3-209	ENST00000472044	IGKV2D-26	A0A0A0MRZ7	120 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	ZNF682	O95780	498 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	HAND1	O96004	215 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	BAALC-AS2	P0C853	105 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	CCL7	P80098	99 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	SRSF6	Q13247	344 aa	Known RBP	0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	C12orf74	Q32Q52	190 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	LINC01554	Q52M75	96 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	TMEM97	Q5BJF2	176 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	TRAPPC6B	Q86SZ2	158 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	KRT222	Q8N1A0	295 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	SLC22A13	Q9Y226	551 aa		0.96	□□□□□ -2.26
PTCD3-209	ENST00000472044	C2orf70	A6NJV1	201 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	GEMIN2	O14893	280 aa	Known RBP	0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	OR1I1	O60431	355 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	ASAH2B	P0C7U1	165 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	BRS3	P32247	399 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	DEFA1	P59665	94 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	YPEL3	P61236	119 aa	Predicted RBP	0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	CTAG1A	P78358	180 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	LINC00311	Q8N616	119 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	PPP1R14B	Q96C90	147 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	C2orf50	Q96LR7	162 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	ODF3	Q96PU9	254 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	TRIM4	Q9C037	500 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	CCDC90B	Q9GZT6	254 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	OR51V1	Q9H2C8	321 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	TAS2R4	Q9NYW5	299 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	ZFYVE9	O95405	1425 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	MED1	Q15648	1581 aa	Predicted RBP	0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	RTL1	A6NKG5	1358 aa		0.95	□□□□□ -2.26
PTCD3-209	ENST00000472044	TAF1L	Q8IZX4	1826 aa		0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	NCOA6	Q14686	2063 aa	Predicted RBP	0.94	□□□□□ -2.26
PTCD3-209	ENST00000472044	LOC110117498	A0A087WWA1	95 aa		0.94	□□□□□ -2.26

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