RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	PRND	Q9UKY0	176 aa		7.06	□□□□□ -1.28
SYNE1-215	ENST00000460912	OR51B2	Q9Y5P1	312 aa		7.06	□□□□□ -1.28
SYNE1-215	ENST00000460912	PDZD2	O15018	2839 aa		7.06	□□□□□ -1.28
SYNE1-215	ENST00000460912	GCG	P01275	180 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	CRYAA	P02489	173 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	MFAP2	P55001	183 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	OR2T10	Q8NGZ9	312 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	OR4A16	Q8NH70	328 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	OSR1	Q8TAX0	266 aa	Predicted RBP	7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	TXN2	Q99757	166 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	NABP2	Q9BQ15	211 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	TMEM208	Q9BTX3	173 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	FUT9	Q9Y231	359 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	CHD8	Q9HCK8	2581 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912		A8MWP6	167 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	SPRY3	O43610	288 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	FRMD6-AS1	P0C7T7	363 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	EDDM3B	P56851	147 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	WT1-AS	Q06250	92 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	DIAPH2-AS1	Q14236	149 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	WFDC12	Q8WWY7	111 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	RITA1	Q96K30	269 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	FNDC4	Q9H6D8	234 aa	Predicted RBP	7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	MRPL36	Q9P0J6	103 aa	Known RBP	7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	PAM16	Q9Y3D7	125 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	CELSR2	Q9HCU4	2923 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	MRPS11	P82912	194 aa	Known RBP	7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	TNFAIP6	P98066	277 aa	Predicted RBP	7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	CD69	Q07108	199 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	TMEM155	Q4W5P6	130 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	SLC25A24	Q6NUK1	477 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	MIR17HG	Q75NE6	70 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	PPP1R35	Q8TAP8	253 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	NUDT11	Q96G61	164 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	EAF1	Q96JC9	268 aa	Predicted RBP	7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	CCL13	Q99616	98 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	C19orf24	Q9BVV8	132 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	GNG12	Q9UBI6	72 aa		7.05	□□□□□ -1.28
SYNE1-215	ENST00000460912	ARFGEF3	Q5TH69	2177 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	SMIM27	A0A1W2PRY6	76 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912		M0QZ24	198 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	IGLV1-47	P01700	117 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	PKIA	P61925	76 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912		Q6ZVH6	145 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	SSX8	Q7RTT4	187 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	OR2D3	Q8NGH3	330 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	C8orf46	Q8TAG6	207 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	KIR2DL5B	A0A0G2JN68	375 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	KIR2DL5B	A0A0G2JPC4	375 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	SCGB2A1	O75556	95 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	KIR2DL5A	Q8N109	375 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	PLPPR2	Q96GM1	343 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	SLC25A33	Q9BSK2	321 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	MRPL20	Q9BYC9	149 aa	Known RBP	7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	SPTA1	P02549	2419 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912		H7BYZ3	331 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	UQCRFS1	P47985	274 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	LYPD2	Q6UXB3	125 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	ZNF664	Q8N3J9	261 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	CACNG8	Q8WXS5	425 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	IL36B	Q9NZH7	164 aa		7.04	□□□□□ -1.28
SYNE1-215	ENST00000460912	FLNC	Q14315	2725 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	IGHV3-7	P01780	117 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	OR4A8	P0C604	315 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	NUTF2	P61970	127 aa	Known RBP	7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	MLANA	Q16655	118 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	CITED1	Q99966	193 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	ZNF430	Q9H8G1	570 aa	Predicted RBP	7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	RAB9B	Q9NP90	201 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	IGLC7	A0M8Q6	106 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	ZNF785	A8K8V0	405 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	GNG7	O60262	68 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	RPLP1	P05386	114 aa	Known RBP	7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	RPL31	P62899	125 aa	Known RBP	7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912		Q0VG73	95 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	C11orf71	Q6IPW1	123 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	OR10W1	Q8NGF6	305 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	RNASE8	Q8TDE3	154 aa	Known RBP	7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	WIPF2	Q8TF74	440 aa	Predicted RBP	7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	KLF12	Q9Y4X4	402 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	C22orf46	C9J442	243 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	PRRG2	O14669	202 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	PLP1	P60201	277 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	BSPH1	Q075Z2	132 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	LTC4S	Q16873	150 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	KLK9	Q2XQG4	91 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	KLK9	Q9UKQ9	250 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912	RNF114	Q9Y508	228 aa		7.03	□□□□□ -1.28
SYNE1-215	ENST00000460912		A0A1W2PRE2	83 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	CD33	P20138	364 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	CHRNB4	P30926	498 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	ADM	P35318	185 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	UBE2G2	P60604	165 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	RHOB	P62745	196 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	PDPN	Q86YL7	162 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	LY6G5B	Q8NDX9	201 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	FXYD5	Q96DB9	178 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912		J3QR06	171 aa		7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	GRN	P28799	593 aa	Known RBP	7.02	□□□□□ -1.29
SYNE1-215	ENST00000460912	PPOX	P50336	477 aa		7.02	□□□□□ -1.29

Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms