RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 SHPKQ9UHJ6 478 aa17.24■□□□□ 0.35
PTPN4-208ENST00000460289 CEBPZOSA8MTT3 80 aa17.23■□□□□ 0.35
PTPN4-208ENST00000460289 TSPAN4O14817 238 aa17.23■□□□□ 0.35
PTPN4-208ENST00000460289 ZNF207O43670 478 aaKnown RBP17.23■□□□□ 0.35
PTPN4-208ENST00000460289 TMEM128Q5BJH2 165 aa17.23■□□□□ 0.35
PTPN4-208ENST00000460289 SMPXQ9UHP9 88 aa17.23■□□□□ 0.35
PTPN4-208ENST00000460289 TRAV14DV4A0A0A6YYC5 116 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 SCGB2A1O75556 95 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 TMEM50AO95807 157 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 OPRK1P41145 380 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 CCR6P51684 374 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 TMED4Q7Z7H5 227 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 TMEM116Q8NCL8 245 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 HIPK2Q9H2X6 1198 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 PRR13Q9NZ81 148 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 NDUFA13Q9P0J0 144 aa17.22■□□□□ 0.35
PTPN4-208ENST00000460289 IGHV7-4-1A0A0J9YVY3 117 aa17.21■□□□□ 0.35
PTPN4-208ENST00000460289 C2orf83Q53S99 150 aa17.21■□□□□ 0.35
PTPN4-208ENST00000460289 LYZL2Q7Z4W2 148 aa17.21■□□□□ 0.35
PTPN4-208ENST00000460289 ZNF414Q96IQ9 312 aa17.21■□□□□ 0.35
PTPN4-208ENST00000460289 GINS3Q9BRX5 216 aa17.21■□□□□ 0.35
PTPN4-208ENST00000460289 SRRQ9GZT4 340 aa17.21■□□□□ 0.35
PTPN4-208ENST00000460289 WFDC10AQ9H1F0 79 aa17.21■□□□□ 0.35
PTPN4-208ENST00000460289 RPS10-NUDT3A0A1W2PQS6 291 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 RBMY1BA6NDE4 496 aaKnown RBP17.2■□□□□ 0.34
PTPN4-208ENST00000460289 RBMY1EA6NEQ0 496 aaKnown RBP17.2■□□□□ 0.34
PTPN4-208ENST00000460289 C3orf84H3BNL1 204 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 CLN5O75503 358 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 RBMY1DP0C7P1 496 aaKnown RBP17.2■□□□□ 0.34
PTPN4-208ENST00000460289 INPP1P49441 399 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 SMCO1Q147U7 214 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 NMSQ5H8A3 153 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 ZNF600Q6ZNG1 722 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 NOXA1Q86UR1 476 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 OR4X1Q8NH49 305 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 CITED4Q96RK1 184 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 RHPN1-AS1Q9BWJ2 59 aa17.2■□□□□ 0.34
PTPN4-208ENST00000460289 FNDC4Q9H6D8 234 aaPredicted RBP17.2■□□□□ 0.34
PTPN4-208ENST00000460289 DUXBA0A1W2PPF3 345 aa17.19■□□□□ 0.34
PTPN4-208ENST00000460289 CHEK1O14757 476 aa17.19■□□□□ 0.34
PTPN4-208ENST00000460289 TOMM20LQ6UXN7 152 aa17.19■□□□□ 0.34
PTPN4-208ENST00000460289 SLC24A4Q8NFF2 622 aa17.19■□□□□ 0.34
PTPN4-208ENST00000460289 RNASEH2CQ8TDP1 164 aaKnown RBP17.19■□□□□ 0.34
PTPN4-208ENST00000460289 TRAV30A0A087WSZ9 112 aa17.18■□□□□ 0.34
PTPN4-208ENST00000460289 A0A1B0GU03 582 aa17.18■□□□□ 0.34
PTPN4-208ENST00000460289 OR4C46A6NHA9 309 aa17.18■□□□□ 0.34
PTPN4-208ENST00000460289 BMI1P35226 326 aa17.18■□□□□ 0.34
PTPN4-208ENST00000460289 MLANAQ16655 118 aa17.18■□□□□ 0.34
PTPN4-208ENST00000460289 TRIQKQ629K1 86 aa17.18■□□□□ 0.34
PTPN4-208ENST00000460289 RNF2Q99496 336 aa17.18■□□□□ 0.34
PTPN4-208ENST00000460289 HSPB7Q9UBY9 170 aa17.18■□□□□ 0.34
PTPN4-208ENST00000460289 PUS1Q9Y606 427 aaKnown RBP eCLIP17.18■□□□□ 0.34
PTPN4-208ENST00000460289 NAP1L6A6NFF2 107 aa17.17■□□□□ 0.34
PTPN4-208ENST00000460289 NXPH3O95157 252 aa17.17■□□□□ 0.34
PTPN4-208ENST00000460289 CD5P06127 495 aa17.17■□□□□ 0.34
PTPN4-208ENST00000460289 VAMP1P23763 118 aa17.17■□□□□ 0.34
PTPN4-208ENST00000460289 TNFRSF9Q07011 255 aa17.17■□□□□ 0.34
PTPN4-208ENST00000460289 RBMS2Q15434 407 aaKnown RBP17.17■□□□□ 0.34
PTPN4-208ENST00000460289 ETFRF1Q6IPR1 90 aa17.17■□□□□ 0.34
PTPN4-208ENST00000460289 MUC7Q8TAX7 377 aa17.17■□□□□ 0.34
PTPN4-208ENST00000460289 U3KQ87 197 aa17.17■□□□□ 0.34
PTPN4-208ENST00000460289 SLC25A4P12235 298 aa17.16■□□□□ 0.34
PTPN4-208ENST00000460289 CENPSQ8N2Z9 138 aa17.16■□□□□ 0.34
PTPN4-208ENST00000460289 LRTM2Q8N967 370 aa17.16■□□□□ 0.34
PTPN4-208ENST00000460289 OR1S1Q8NH92 325 aa17.16■□□□□ 0.34
PTPN4-208ENST00000460289 MRPL36Q9P0J6 103 aaKnown RBP17.16■□□□□ 0.34
PTPN4-208ENST00000460289 IFNA10P01566 189 aa17.15■□□□□ 0.34
PTPN4-208ENST00000460289 NPY1RP25929 384 aa17.15■□□□□ 0.34
PTPN4-208ENST00000460289 BAK1Q16611 211 aa17.15■□□□□ 0.34
PTPN4-208ENST00000460289 DTD1Q8TEA8 209 aa17.15■□□□□ 0.34
PTPN4-208ENST00000460289 FAM110AQ9BQ89 295 aa17.15■□□□□ 0.34
PTPN4-208ENST00000460289 ZFAND3Q9H8U3 227 aa17.15■□□□□ 0.34
PTPN4-208ENST00000460289 LOC102724200A0A096LPH7 203 aaPredicted RBP17.14■□□□□ 0.33
PTPN4-208ENST00000460289 IGHV3-49A0A0A0MS15 119 aa17.14■□□□□ 0.33
PTPN4-208ENST00000460289 SFT2D2O95562 160 aa17.14■□□□□ 0.33
PTPN4-208ENST00000460289 CMC4P56277 68 aaPredicted RBP17.14■□□□□ 0.33
PTPN4-208ENST00000460289 ATP5IP56385 69 aaPredicted RBP17.14■□□□□ 0.33
PTPN4-208ENST00000460289 GGTLC1Q9BX51 225 aa17.14■□□□□ 0.33
PTPN4-208ENST00000460289 RBKSQ9H477 322 aa17.14■□□□□ 0.33
PTPN4-208ENST00000460289 NBEAL2Q6ZNJ1 2754 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 CENPXA8MT69 81 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 NPPCP23582 126 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 UBE2MP61081 183 aaKnown RBP17.13■□□□□ 0.33
PTPN4-208ENST00000460289 PAFAH1B2P68402 229 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 PPP1R1AQ13522 171 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 PRSS54Q6PEW0 395 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 VSIRQ9H7M9 311 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 EDA2RQ9HAV5 297 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 UBQLN2Q9UHD9 624 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 TMED3Q9Y3Q3 217 aa17.13■□□□□ 0.33
PTPN4-208ENST00000460289 IGHV3OR16-13A0A075B7E8 117 aa17.12■□□□□ 0.33
PTPN4-208ENST00000460289 IGHV3-74A0A0B4J1X5 117 aa17.12■□□□□ 0.33
PTPN4-208ENST00000460289 A0A1W2PS18 150 aa17.12■□□□□ 0.33
PTPN4-208ENST00000460289 SLC25A6P12236 298 aa17.12■□□□□ 0.33
PTPN4-208ENST00000460289 FAM90A2PQ658T7 463 aa17.12■□□□□ 0.33
PTPN4-208ENST00000460289 OR1S2Q8NGQ3 325 aa17.12■□□□□ 0.33
PTPN4-208ENST00000460289 TMEM170AQ8WVE7 144 aa17.12■□□□□ 0.33
PTPN4-208ENST00000460289 TMEM231Q9H6L2 316 aa17.12■□□□□ 0.33
PTPN4-208ENST00000460289 PITX3O75364 302 aa17.11■□□□□ 0.33
PTPN4-208ENST00000460289 IGKV1-17P01599 117 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms