RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 IGHV4-28A0A0C4DH34 117 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 A0A1B0GU03 582 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 RPS10-NUDT3A0A1W2PQS6 291 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 HELTA6NFD8 242 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 K7EQG2 157 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 NPY1RP25929 384 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 CRYBB3P26998 211 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 HLA-DMBP28068 263 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 ETV6P41212 452 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 HOXA1P49639 335 aaPredicted RBP9.67□□□□□ -0.86
HMGB3-204ENST00000448905 RND3P61587 244 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 TRIM16LQ309B1 348 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 SPINK9Q5DT21 86 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 LINC00336Q6ZUF6 198 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 TRPT1Q86TN4 253 aaKnown RBP9.67□□□□□ -0.86
HMGB3-204ENST00000448905 Q8NAQ8 132 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 OR4X1Q8NH49 305 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 RNASE11Q8TAA1 199 aaKnown RBP9.67□□□□□ -0.86
HMGB3-204ENST00000448905 ZFAND1Q8TCF1 268 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 ZFAND3Q9H8U3 227 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 C3orf85A0A1B0GTC6 90 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 B3GALNT1O75752 331 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 ZNF688P0C7X2 276 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 RBMY1A1P0DJD3 496 aaKnown RBP9.66□□□□□ -0.86
HMGB3-204ENST00000448905 RBMY1CP0DJD4 496 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 TGFBR1P36897 503 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 P2RY1P47900 373 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 PIGPP57054 158 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 RBMY1FQ15415 496 aaKnown RBP9.66□□□□□ -0.86
HMGB3-204ENST00000448905 RNASE10Q5GAN6 216 aaKnown RBP9.66□□□□□ -0.86
HMGB3-204ENST00000448905 ACTL10Q5JWF8 245 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 PVRIGQ6DKI7 326 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 FAM24BQ8N5W8 94 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 C1QTNF4Q9BXJ3 329 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 COPZ2Q9P299 210 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 TBC1D24Q9ULP9 559 aa9.66□□□□□ -0.86
HMGB3-204ENST00000448905 A0A087WXM4 84 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 ZNF705EA8MWA4 302 aaPredicted RBP9.65□□□□□ -0.86
HMGB3-204ENST00000448905 M0QYG6 137 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 IGKV1-5P01602 117 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 HTR2BP41595 481 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 SNRPD3P62318 126 aaKnown RBP9.65□□□□□ -0.86
HMGB3-204ENST00000448905 DHRS2Q13268 280 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 IZUMO4Q1ZYL8 232 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 MZT2AQ6P582 158 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 ARRDC1Q8N5I2 433 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 CCDC71LQ8N9Z2 235 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 C15orf40Q8WUR7 153 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 YIPF6Q96EC8 236 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 RAB40CQ96S21 281 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 RNF126Q9BV68 326 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 CACFD1Q9UGQ2 172 aa9.65□□□□□ -0.86
HMGB3-204ENST00000448905 IGHV4-4A0A075B6R2 117 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 KNCNA6PVL3 124 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 FAM25AB3EWG3 89 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 FAM25CB3EWG5 89 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 FAM25GB3EWG6 89 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 P0DMU3 169 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 FAM231AP0DMU4 169 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 FAM231CP0DMU5 169 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 RNASE2P10153 161 aaKnown RBP9.64□□□□□ -0.87
HMGB3-204ENST00000448905 PI3P19957 117 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 TBPP20226 339 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 RORCP51449 518 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 PPP5CP53041 499 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 SPCS3P61009 180 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 MLANAQ16655 118 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 Q6ZTC4 211 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 FAM219AQ8IW50 185 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 TERB2Q8NHR7 220 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 TP53RKQ96S44 253 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.64□□□□□ -0.87
HMGB3-204ENST00000448905 PFDN2Q9UHV9 154 aa9.64□□□□□ -0.87
HMGB3-204ENST00000448905 DEFB131BA0A096LNP1 70 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 GIG44P09565 113 aaPredicted RBP9.63□□□□□ -0.87
HMGB3-204ENST00000448905 SLC25A4P12235 298 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 ELK1P19419 428 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 SP6Q3SY56 376 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 PSMG4Q5JS54 123 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 ETFRF1Q6IPR1 90 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 NOXA1Q86UR1 476 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 OR1S2Q8NGQ3 325 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 OR52E5Q8NH55 327 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 DCANP1Q8TF63 244 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 AP3S1Q92572 193 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 SEPSECSQ9HD40 501 aaKnown RBP9.63□□□□□ -0.87
HMGB3-204ENST00000448905 HEYLQ9NQ87 328 aaPredicted RBP9.63□□□□□ -0.87
HMGB3-204ENST00000448905 KLK11Q9UBX7 282 aa9.63□□□□□ -0.87
HMGB3-204ENST00000448905 HPGDSO60760 199 aa9.62□□□□□ -0.87
HMGB3-204ENST00000448905 CD3DP04234 171 aa9.62□□□□□ -0.87
HMGB3-204ENST00000448905 HNRNPCP07910 306 aaKnown RBP eCLIP9.62□□□□□ -0.87
HMGB3-204ENST00000448905 P0C879 139 aa9.62□□□□□ -0.87
HMGB3-204ENST00000448905 YPEL3P61236 119 aaPredicted RBP9.62□□□□□ -0.87
HMGB3-204ENST00000448905 TIGITQ495A1 244 aa9.62□□□□□ -0.87
HMGB3-204ENST00000448905 RNASEH2CQ8TDP1 164 aaKnown RBP9.62□□□□□ -0.87
HMGB3-204ENST00000448905 NDUFAF3Q9BU61 184 aa9.62□□□□□ -0.87
HMGB3-204ENST00000448905 FNDC4Q9H6D8 234 aaPredicted RBP9.62□□□□□ -0.87
HMGB3-204ENST00000448905 CLEC5AQ9NY25 188 aa9.62□□□□□ -0.87
HMGB3-204ENST00000448905 X6R8D5 127 aa9.62□□□□□ -0.87
HMGB3-204ENST00000448905 PCLOQ9Y6V0 5065 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms