RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 CGAP01215 116 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 LEPP41159 167 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 IGLV3-21P80748 117 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 CD33P20138 364 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 GPX4P36969 197 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 HIST1H2BAQ96A08 127 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 DANCRP0C864 163 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 LTBRP36941 435 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 COL4A4P53420 1690 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 C12orf77C9JDV5 145 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 IGFBP2P18065 325 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 H2BFSP57053 126 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 TMEM219Q86XT9 240 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 ATP5IP56385 69 aaPredicted RBP10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 SIGLEC5O15389 551 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 SAP30O75446 220 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 SLC25A34Q6PIV7 304 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 FAM131CQ96AQ9 280 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 GPR132Q9UNW8 380 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 TBL2Q9Y4P3 447 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 C17orf98A8MV24 154 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 SLC25A20O43772 301 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 HLA-DQB1P01920 261 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 PMCHL1Q16048 86 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 TRAV8-6A0A0B4J262 113 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 A0A0G2JK05 382 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 IQCF6A8MYZ5 107 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 TRBV7-9A0A0J9YWB2 115 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 IL6RP08887 468 aaPredicted RBP10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 PSG7Q13046 419 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 POC1AQ8NBT0 407 aa10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 SETD2Q9BYW2 2564 aaPredicted RBP10.12□□□□□ -0.79
CCDC88A-207ENST00000436346 NBEAP1P0C6P0 100 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 DTX2Q86UW9 622 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 TMEM133Q9H2Q1 129 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 A0A1B0GUT8 65 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 LILRA1O75019 489 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 TTC32Q5I0X7 151 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 IGLV3-19P01714 112 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 RPP21Q9H633 154 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 NPIPB9F8W1W9 429 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 NPIPB7O75200 414 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 C10orf126Q8N4M7 172 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 OR9G4Q8NGQ1 327 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 PSMG3Q9BT73 122 aaPredicted RBP10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 IFI27L2Q9H2X8 130 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 PTPRSQ13332 1948 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 C1QL2Q7Z5L3 287 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 OR52E5Q8NH55 327 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 TRGV4A0A0C4DH28 118 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 ZNF815PA8K554 130 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 SMIM13P0DJ93 91 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 RHOGP84095 191 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 OR10S1Q8NGN2 331 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 RNASEH2CQ8TDP1 164 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 GGACTQ9BVM4 153 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 C3orf36Q3SXR2 165 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 DEFB121Q5J5C9 76 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 VMO1Q7Z5L0 202 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 NUDT10Q8NFP7 164 aa10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 REPIN1Q9BWE0 567 aaKnown RBP10.11□□□□□ -0.79
CCDC88A-207ENST00000436346 SOD3P08294 240 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 TBR1Q16650 682 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 CYB5R2Q6BCY4 276 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 LRP4O75096 1905 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 ZNF250P15622 560 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 SCO2A0A1W2PP80 73 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 SIGLEC15Q6ZMC9 328 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 ZCCHC24Q8N2G6 241 aaKnown RBP10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 RCC1LQ96I51 464 aaKnown RBP10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 HIGD1CA8MV81 97 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 NUDT11Q96G61 164 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 OR11H12B2RN74 326 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 COTL1Q14019 142 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 OR11H1Q8NG94 326 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 OR11H2Q8NH07 326 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 RND3P61587 244 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 LYNX1G3V0Z9 82 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 LYNX1P0DP58 116 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 NPDC1Q9NQX5 325 aaPredicted RBP10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 JKAMPQ9P055 326 aa10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 TNRC6BQ9UPQ9 1833 aaKnown RBP10.1□□□□□ -0.79
CCDC88A-207ENST00000436346 CIARTQ8N365 385 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 HOXA5P20719 270 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 LEMD1Q68G75 181 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 ZNF497Q6ZNH5 498 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 TMEM183AQ8IXX5 376 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 ZNF837Q96EG3 531 aaPredicted RBP10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 SEPSECSQ9HD40 501 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 PSMG4Q5JS54 123 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 KCNS1Q96KK3 526 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 CCL3L1P16619 93 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 ZNF585BQ52M93 769 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 WFIKKN1Q96NZ8 548 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 WNT2P09544 360 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 ZNF506Q5JVG8 444 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 TRAV14DV4A0A0A6YYC5 116 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 DSCR9P59020 149 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 LTBP2Q14767 1821 aa10.09□□□□□ -0.79
CCDC88A-207ENST00000436346 E9PLN8 166 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms