RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RMI2Q96E14 147 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 IQCF6A8MYZ5 107 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 RHOGP84095 191 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 KIAA1644Q3SXP7 199 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 OR10W1Q8NGF6 305 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 TMEM133Q9H2Q1 129 aa5.78□□□□□ -1.48
SCN1A-204ENST00000423058 B4DSR2 109 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 IGHV4-39P01824 125 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 RPL36AP83881 106 aaKnown RBP5.77□□□□□ -1.49
SCN1A-204ENST00000423058 GLMPQ8WWB7 406 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 RPL36ALQ969Q0 106 aaKnown RBP5.77□□□□□ -1.49
SCN1A-204ENST00000423058 SPANXCQ9NY87 97 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 LAMTOR3Q9UHA4 124 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 TRAV40A0A0B4J280 105 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 TRBV5-5A0A0J9YX44 114 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 M0R2P5 195 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 NANOS3P60323 173 aaKnown RBP5.77□□□□□ -1.49
SCN1A-204ENST00000423058 COQ2Q96H96 371 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 SIGLEC12Q96PQ1 595 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 IL36BQ9NZH7 164 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 KLF12Q9Y4X4 402 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 A0A1B0GWB2 263 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 RCHY1Q96PM5 261 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 TRAV8-2A0A0B4J237 113 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 H3BTX0 84 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 EFNB1P98172 346 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 ATXN8Q156A1 80 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 C3orf36Q3SXR2 165 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 CRIM1Q9NZV1 1036 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 VWA8A3KMH1 1905 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 LHBP01229 141 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 CDKN1AP38936 164 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 MINOS1Q5TGZ0 78 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 SPSB3Q6PJ21 355 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 LINC01356Q8N9X3 169 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 TMEM52Q8NDY8 209 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 SPCS1Q9Y6A9 102 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 MINOS1-NBL1R4GNA1 71 aa5.77□□□□□ -1.49
SCN1A-204ENST00000423058 IGKV1D-42A0A075B6H8 117 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 INS-IGF2F8WCM5 200 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 GCM2O75603 506 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-204ENST00000423058 DPM2O94777 84 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 INSP01308 110 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 ERCC8Q13216 396 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 USMG5Q96IX5 58 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 SSBP4Q9BWG4 385 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-204ENST00000423058 YPEL1O60688 119 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 P2RY4P51582 365 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 RBMY1FQ15415 496 aaKnown RBP5.76□□□□□ -1.49
SCN1A-204ENST00000423058 SRSF7Q16629 238 aaKnown RBP eCLIP5.76□□□□□ -1.49
SCN1A-204ENST00000423058 C1orf100Q5SVJ3 147 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 YPEL2Q96QA6 119 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 DANCRP0C864 163 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 EGR4Q05215 589 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 SPACA3Q8IXA5 215 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 DLX4Q92988 240 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-204ENST00000423058 TMEM238C9JI98 176 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 CGB3P0DN86 165 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 LIMS1P48059 325 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 IL18BPO95998 194 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 GATA3P23771 443 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 C2orf68Q2NKX9 166 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 MRPL52Q86TS9 123 aaKnown RBP5.76□□□□□ -1.49
SCN1A-204ENST00000423058 IZUMO1RA6ND01 250 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 APOC4P55056 127 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 PRCDQ00LT1 54 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 ASPHD2Q6ICH7 369 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 RNF125Q96EQ8 232 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 SPSB2Q99619 263 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 IGLV1-36A0A0B4J1U3 117 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 PQLC2LA1A4F0 135 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 IGHV1-2P23083 117 aa5.76□□□□□ -1.49
SCN1A-204ENST00000423058 LRRC37AA6NMS7 1700 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 KIF26AQ9ULI4 1882 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-204ENST00000423058 TRAV8-4A0A0B4J246 113 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 TRAV41A0A0B4J266 112 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 HIGD1CA8MV81 97 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 VWC2LB2RUY7 222 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 LEPROTO15243 131 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 ZNHIT1O43257 154 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 GATD1Q8NB37 220 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 CHTOPQ9Y3Y2 248 aaKnown RBP5.75□□□□□ -1.49
SCN1A-204ENST00000423058 S4R3C0 116 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 ZSWIM8A7E2V4 1837 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 PAX4O43316 350 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 TNFRSF6BO95407 300 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 HBDP02042 147 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 EFNA4P52798 201 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 LY6DQ14210 128 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 LCN12Q6JVE5 192 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 MESP2Q0VG99 397 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 TMEM187Q14656 261 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 KLHL30-AS1Q8NEE0 82 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 ORAOV1Q8WV07 137 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 CGAP01215 116 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 RPL35AP18077 110 aaKnown RBP5.75□□□□□ -1.49
SCN1A-204ENST00000423058 MUC21Q5SSG8 566 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 SUMO4Q6EEV6 95 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 ZNF562Q6V9R5 426 aa5.75□□□□□ -1.49
SCN1A-204ENST00000423058 C1QTNF5Q9BXJ0 243 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms