RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 VWC2LB2RUY7 222 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 TGFAP01135 160 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 CX3CL1P78423 397 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 DIAPH2-AS1Q14236 149 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 RPP25LQ8N5L8 163 aaKnown RBP6.72□□□□□ -1.33
USP54-203ENST00000418501 TTC9CQ8N5M4 171 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 TMEM116Q8NCL8 245 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 FAM110DQ8TAY7 271 aaPredicted RBP6.72□□□□□ -1.33
USP54-203ENST00000418501 A0A0G2JLM5 398 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 H3BQ15 152 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 BMPR1BO00238 502 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 SLC35B1P78383 322 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 C10orf91Q5T1B1 145 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 SPSB3Q6PJ21 355 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 LHFPL4Q7Z7J7 247 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 IGFBPL1Q8WX77 278 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 ARID1AO14497 2285 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 PKDREJQ9NTG1 2253 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 IGLC7A0M8Q6 106 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 H3BUA1 57 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 ARL14EPLP0DKL9 152 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 ORM2P19652 201 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 LYZP61626 148 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 UBE2G1P62253 170 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 ATP5G2Q06055 141 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 WT1-ASQ06250 92 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 ICAM4Q14773 271 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 ADIRFQ15847 76 aa6.72□□□□□ -1.33
USP54-203ENST00000418501 C1orf229Q6ZS94 237 aaPredicted RBP6.72□□□□□ -1.33
USP54-203ENST00000418501 A0A087WWC5 75 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 A0A1W2PRE2 83 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 H7BYZ3 331 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 CLDN34H7C241 214 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 GATCO43716 136 aaKnown RBP6.71□□□□□ -1.33
USP54-203ENST00000418501 OR2C1O95371 312 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 BPIFA4PQ86YQ2 179 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 OR2T6Q8NHC8 308 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 GPR82Q96P67 336 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 SSX3Q99909 188 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 OR51M1Q9H341 326 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 AAMDCQ9H7C9 122 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 TUBA4BQ9H853 241 aa6.71□□□□□ -1.33
USP54-203ENST00000418501 REG1AP05451 166 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 ECSCRQ19T08 205 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 CFHR4Q92496 578 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 MBD6Q96DN6 1003 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 FBLL1A6NHQ2 334 aaKnown RBP6.71□□□□□ -1.34
USP54-203ENST00000418501 FAM223BA6NKX1 122 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 SRP14P37108 136 aaKnown RBP6.71□□□□□ -1.34
USP54-203ENST00000418501 YPEL3P61236 119 aaPredicted RBP6.71□□□□□ -1.34
USP54-203ENST00000418501 PRR20EP86478 221 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 PRR20CP86479 221 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 PRR20DP86480 221 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 PRR20BP86481 221 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 PRR20AP86496 221 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 AWAT1Q58HT5 328 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 Q5PR19 223 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 C10orf55Q5SWW7 151 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 FAM223AQ8IWN6 122 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 CYB561D1Q8N8Q1 229 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 ZNF48Q96MX3 618 aaPredicted RBP6.71□□□□□ -1.34
USP54-203ENST00000418501 IGHV4-30-2A0A087WSY4 118 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 AP4M1O00189 453 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 CRYGCP07315 174 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 MDKP21741 143 aaPredicted RBP6.71□□□□□ -1.34
USP54-203ENST00000418501 NECAP1Q8NC96 275 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 OR5AU1Q8NGC0 362 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 SGMS2Q8NHU3 365 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 MEGF9Q9H1U4 602 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 FBXL7Q9UJT9 491 aa6.71□□□□□ -1.34
USP54-203ENST00000418501 TRBV7-1A0A0A6YYK4 115 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 CENPVL3A0A0U1RRI6 287 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 A0A1W2PPR1 153 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 EIF3GO75821 320 aaKnown RBP eCLIP6.7□□□□□ -1.34
USP54-203ENST00000418501 YIF1AO95070 293 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 AREGP15514 252 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 UBE2G2P60604 165 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 ARFGEF3Q5TH69 2177 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 YLPM1P49750 1951 aaKnown RBP6.7□□□□□ -1.34
USP54-203ENST00000418501 ROS1P08922 2347 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 MALRD1Q5VYJ5 2156 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 C7orf77A4D0Y5 90 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 PRSS46E5RG02 174 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 RPL7P18124 248 aaKnown RBP6.7□□□□□ -1.34
USP54-203ENST00000418501 HIST1H2BAQ96A08 127 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 USMG5Q96IX5 58 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 GNB4Q9HAV0 340 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 MYO15AQ9UKN7 3530 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 TOMM40O96008 361 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 COX19Q49B96 90 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 RARRES2Q99969 163 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 CLEC5AQ9NY25 188 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 SPTBN4Q9H254 2564 aa6.7□□□□□ -1.34
USP54-203ENST00000418501 PSG9Q00887 426 aa6.69□□□□□ -1.34
USP54-203ENST00000418501 VSIRQ9H7M9 311 aa6.69□□□□□ -1.34
USP54-203ENST00000418501 DOK5Q9P104 306 aa6.69□□□□□ -1.34
USP54-203ENST00000418501 RABAC1Q9UI14 185 aa6.69□□□□□ -1.34
USP54-203ENST00000418501 LY96Q9Y6Y9 160 aa6.69□□□□□ -1.34
USP54-203ENST00000418501 DSCAMO60469 2012 aa6.69□□□□□ -1.34
USP54-203ENST00000418501 TRAV41A0A0B4J266 112 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms