RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 TNRC6AQ8NDV7 1962 aaKnown RBP6.65□□□□□ -1.35
SYNE1-210ENST00000409694 FAM19A2Q8N3H0 131 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 PRSS22Q9GZN4 317 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 TMEM242Q9NWH2 141 aa6.65□□□□□ -1.35
SYNE1-210ENST00000409694 DIDO1Q9BTC0 2240 aaKnown RBP6.64□□□□□ -1.35
SYNE1-210ENST00000409694 LIMS1P48059 325 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 TRAV14DV4A0A0A6YYC5 116 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 ADMP35318 185 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 Q6ZT83 130 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 SLC25A39Q9BZJ4 359 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-210ENST00000409694 IGFBP2P18065 325 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 GTF3AQ92664 365 aaKnown RBP6.64□□□□□ -1.35
SYNE1-210ENST00000409694 TCRBV4S1A1TA0A5B7 111 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 H3BTX0 84 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 KLF17Q5JT82 389 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-210ENST00000409694 EREGO14944 169 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 TSKUQ8WUA8 353 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 FAM60AQ9NP50 221 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 IQCF6A8MYZ5 107 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 GZMBP10144 247 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 H2BFSP57053 126 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 NCOR1P1Q9H4R4 102 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 HOXB3P14651 431 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-210ENST00000409694 UTF1Q5T230 341 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 UBL5Q9BZL1 73 aa6.64□□□□□ -1.35
SYNE1-210ENST00000409694 NDUFC2O95298 119 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 EFEMP2O95967 443 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 ASPHD2Q6ICH7 369 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 RNF125Q96EQ8 232 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 TM2D1Q9BX74 207 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 LHFPL6Q9Y693 200 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 CD160O95971 181 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 SPINK8P0C7L1 97 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 GLRXP35754 106 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 TMEM92Q6UXU6 159 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 CFHR5Q9BXR6 569 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 TRBV20-1A0A075B6N2 111 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 IGHV3-66A0A0C4DH42 116 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 SRP19P09132 144 aaKnown RBP6.63□□□□□ -1.35
SYNE1-210ENST00000409694 RPL36AP83881 106 aaKnown RBP6.63□□□□□ -1.35
SYNE1-210ENST00000409694 ST6GALNAC3Q8NDV1 305 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 RPL36ALQ969Q0 106 aaKnown RBP6.63□□□□□ -1.35
SYNE1-210ENST00000409694 UBE2CO00762 179 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 TFF3Q07654 80 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 TCTEX1D4Q5JR98 221 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 ZNF826PQ6ZT77 177 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 A0A1W2PRE2 83 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 DSCR8Q96T75 97 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 CELA2BP08218 269 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-210ENST00000409694 C8orf82Q6P1X6 216 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-210ENST00000409694 DOCK7Q96N67 2140 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 A0A0G2JMM0 328 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 A0A1W2PPB8 328 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 KIR3DP1A8MWS1 328 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 SPINK2P20155 84 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 RPL39P5Q59GN2 51 aa6.63□□□□□ -1.35
SYNE1-210ENST00000409694 A0A0J9YW62 118 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 PRTN3P24158 256 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 PLA2G2FQ9BZM2 168 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 TMEM144Q7Z5S9 345 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 PGFP49763 221 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 SPRED2Q7Z698 418 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 ZNF708P17019 499 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 IGHV3-23P01764 117 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 C8orf46Q8TAG6 207 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 TIMM21Q9BVV7 248 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 NEUROG3Q9Y4Z2 214 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 VCYO14598 125 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 COLCA1Q6ZS62 124 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 PTPRDP23468 1912 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 PROB1E7EW31 1015 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 ATXN7O15265 892 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-210ENST00000409694 UMODP07911 640 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 LHX2P50458 406 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 DSCR9P59020 149 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 TMEM126AQ9H061 195 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 DOCK4Q8N1I0 1966 aa6.62□□□□□ -1.35
SYNE1-210ENST00000409694 A8MXK9 166 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 HRKO00198 91 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 SMAD7O15105 426 aaKnown RBP6.61□□□□□ -1.35
SYNE1-210ENST00000409694 CCL4P13236 92 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 CCL1P22362 96 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 ZNRF1Q8ND25 227 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 TNFSF13O75888 250 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 NKAPP1Q8N9T2 125 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 ADAMTSL3P82987 1691 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 IFITM1P13164 125 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 UCP1P25874 307 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 C6orf226Q5I0X4 101 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 SFTA2Q6UW10 78 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 RPRMLQ8N4K4 120 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 WFDC6Q9BQY6 131 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 TRBV5-3A0A0A0MS03 114 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 C1QL4Q86Z23 238 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 ZPLD1Q8TCW7 415 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 FBLIM1Q8WUP2 373 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 TNFRSF14Q92956 283 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 LEAP2Q969E1 77 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 RCHY1Q96PM5 261 aa6.61□□□□□ -1.35
SYNE1-210ENST00000409694 CASP8AP2Q9UKL3 1982 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms