RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 OTOGLQ3ZCN5 2332 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 M0QZK8 103 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 GGCTO75223 188 aaKnown RBP15.21■□□□□ 0.03
USP48-204ENST00000400301 SERF1AO75920 110 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 VAMP3Q15836 100 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 C2orf83Q53S99 150 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 DUX4L9Q6RFH8 374 aaPredicted RBP15.21■□□□□ 0.03
USP48-204ENST00000400301 TMEM133Q9H2Q1 129 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 DCAF16Q9NXF7 216 aa15.21■□□□□ 0.03
USP48-204ENST00000400301 YTHDF2Q9Y5A9 579 aaKnown RBP15.21■□□□□ 0.03
USP48-204ENST00000400301 TRAV9-1A0A075B6T8 112 aa15.21■□□□□ 0.02
USP48-204ENST00000400301 MLANAQ16655 118 aa15.21■□□□□ 0.02
USP48-204ENST00000400301 OR4A5Q8NH83 315 aa15.21■□□□□ 0.02
USP48-204ENST00000400301 TMEM191AQ9H0A3 160 aa15.21■□□□□ 0.02
USP48-204ENST00000400301 PFN1P07737 140 aaKnown RBP15.2■□□□□ 0.02
USP48-204ENST00000400301 WT1P19544 449 aaPredicted RBP15.2■□□□□ 0.02
USP48-204ENST00000400301 MAS1LP35410 378 aa15.2■□□□□ 0.02
USP48-204ENST00000400301 SLC25A33Q9BSK2 321 aa15.2■□□□□ 0.02
USP48-204ENST00000400301 ZNF25P17030 456 aaPredicted RBP15.2■□□□□ 0.02
USP48-204ENST00000400301 TAS2R60P59551 318 aa15.2■□□□□ 0.02
USP48-204ENST00000400301 SNRNP40Q96DI7 357 aaKnown RBP15.2■□□□□ 0.02
USP48-204ENST00000400301 TMPRSS3P57727 454 aa15.2■□□□□ 0.02
USP48-204ENST00000400301 FOXL1Q12952 345 aa15.2■□□□□ 0.02
USP48-204ENST00000400301 A0A0G2JNJ9 132 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 OR5AL1P0C617 328 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 ZNF134P52741 427 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 SLC25A48Q6ZT89 311 aaKnown RBP15.19■□□□□ 0.02
USP48-204ENST00000400301 Q9UFV3 132 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 ORM1P02763 201 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 TBR1Q16650 682 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 OR4B1Q8NGF8 309 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 S4R3C0 116 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.19■□□□□ 0.02
USP48-204ENST00000400301 DPRXA6NFQ7 191 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 NHLH1Q02575 133 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 TCRBV4S1A1TA0A5B7 111 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 TMEM178BH3BS89 294 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 IL4P05112 153 aa15.19■□□□□ 0.02
USP48-204ENST00000400301 LOC105371242A0A075B767 164 aa15.18■□□□□ 0.02
USP48-204ENST00000400301 GNG5P63218 68 aa15.18■□□□□ 0.02
USP48-204ENST00000400301 ADIPOQQ15848 244 aa15.18■□□□□ 0.02
USP48-204ENST00000400301 OSTCQ9NRP0 149 aa15.18■□□□□ 0.02
USP48-204ENST00000400301 VDAC2P45880 294 aaPredicted RBP15.18■□□□□ 0.02
USP48-204ENST00000400301 FOXA3P55318 350 aaPredicted RBP15.18■□□□□ 0.02
USP48-204ENST00000400301 SRSF12Q8WXF0 261 aaKnown RBP15.18■□□□□ 0.02
USP48-204ENST00000400301 ZCCHC14Q8WYQ9 949 aaKnown RBP15.18■□□□□ 0.02
USP48-204ENST00000400301 DPM3Q9P2X0 92 aa15.18■□□□□ 0.02
USP48-204ENST00000400301 CREBBPQ92793 2442 aa15.18■□□□□ 0.02
USP48-204ENST00000400301 SPATA45Q537H7 98 aa15.18■□□□□ 0.02
USP48-204ENST00000400301 OR5R1Q8NH85 324 aa15.18■□□□□ 0.02
USP48-204ENST00000400301 MFAP4P55083 255 aa15.17■□□□□ 0.02
USP48-204ENST00000400301 MAP1LC3CQ9BXW4 147 aa15.17■□□□□ 0.02
USP48-204ENST00000400301 TBL2Q9Y4P3 447 aaKnown RBP15.17■□□□□ 0.02
USP48-204ENST00000400301 CA1P00915 261 aaPredicted RBP15.17■□□□□ 0.02
USP48-204ENST00000400301 LEMD1Q68G75 181 aa15.17■□□□□ 0.02
USP48-204ENST00000400301 GRAMD2BQ96HH9 432 aa15.17■□□□□ 0.02
USP48-204ENST00000400301 RPLP1P05386 114 aaKnown RBP15.17■□□□□ 0.02
USP48-204ENST00000400301 ATOH7Q8N100 152 aa15.17■□□□□ 0.02
USP48-204ENST00000400301 IGHV3-35A0A0C4DH35 117 aa15.16■□□□□ 0.02
USP48-204ENST00000400301 ITGB1BP1O14713 200 aa15.16■□□□□ 0.02
USP48-204ENST00000400301 S100A4P26447 101 aaKnown RBP15.16■□□□□ 0.02
USP48-204ENST00000400301 PPP1R27Q86WC6 154 aa15.16■□□□□ 0.02
USP48-204ENST00000400301 H0YJW9 148 aa15.16■□□□□ 0.02
USP48-204ENST00000400301 C17orf58Q2M2W7 97 aa15.16■□□□□ 0.02
USP48-204ENST00000400301 CFHR2P36980 270 aa15.16■□□□□ 0.02
USP48-204ENST00000400301 TMEM256Q8N2U0 113 aa15.16■□□□□ 0.02
USP48-204ENST00000400301 PRO3102Q9H379 93 aa15.16■□□□□ 0.02
USP48-204ENST00000400301 GOSR1O95249 250 aa15.16■□□□□ 0.02
USP48-204ENST00000400301 LBHQ53QV2 105 aaPredicted RBP15.16■□□□□ 0.02
USP48-204ENST00000400301 WISP2O76076 250 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 AREGP15514 252 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 LHFPL4Q7Z7J7 247 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 FAM19A2Q8N3H0 131 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 NUP37Q8NFH4 326 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 ACTL10Q5JWF8 245 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 C11orf1Q9H5F2 150 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 TMEM14BQ9NUH8 114 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 FAM215AQ9Y5M1 114 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 KLF2Q9Y5W3 355 aaPredicted RBP15.15■□□□□ 0.02
USP48-204ENST00000400301 C9JCJ5 164 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 RNASE2P10153 161 aaKnown RBP15.15■□□□□ 0.02
USP48-204ENST00000400301 SPACA3Q8IXA5 215 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 TMEM167AQ8TBQ9 72 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 GPR82Q96P67 336 aa15.15■□□□□ 0.02
USP48-204ENST00000400301 LYPD2Q6UXB3 125 aa15.14■□□□□ 0.01
USP48-204ENST00000400301 WNT10AQ9GZT5 417 aa15.14■□□□□ 0.01
USP48-204ENST00000400301 HBBP68871 147 aa15.14■□□□□ 0.01
USP48-204ENST00000400301 GSX1Q9H4S2 264 aaPredicted RBP15.14■□□□□ 0.01
USP48-204ENST00000400301 IZUMO1RA6ND01 250 aa15.14■□□□□ 0.01
USP48-204ENST00000400301 HIGD1CA8MV81 97 aa15.14■□□□□ 0.01
USP48-204ENST00000400301 WNT2P09544 360 aa15.14■□□□□ 0.01
USP48-204ENST00000400301 CD24P25063 80 aa15.14■□□□□ 0.01
USP48-204ENST00000400301 GATA4P43694 442 aa15.14■□□□□ 0.01
USP48-204ENST00000400301 NEU1Q99519 415 aa15.14■□□□□ 0.01
USP48-204ENST00000400301 MMP23AO75900 390 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 IGHV1-8P0DP01 117 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 TEX45Q8NA69 505 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 LEPROTL1O95214 131 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 PIP4P1Q86T03 277 aa15.13■□□□□ 0.01
USP48-204ENST00000400301 Q9H3A6 140 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms