RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 MFAP4P55083 255 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 ZNF616Q08AN1 781 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 RAB32Q13637 225 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 ECSCRQ19T08 205 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 C11orf87Q6NUJ2 197 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 C18orf65Q6ZTR6 163 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 TAF15Q92804 592 aaKnown RBP eCLIP5.35□□□□□ -1.55
LIMA1-202ENST00000394943 MARC2Q969Z3 335 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 MCRIP2Q9BUT9 160 aaKnown RBP5.35□□□□□ -1.55
LIMA1-202ENST00000394943 TNFRSF19Q9NS68 423 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 C21orf62Q9NYP8 219 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 MRPL36Q9P0J6 103 aaKnown RBP5.35□□□□□ -1.55
LIMA1-202ENST00000394943 TNFSF18Q9UNG2 199 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 HSPB11Q9Y547 144 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 WNK2Q9Y3S1 2297 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 TRRAPQ9Y4A5 3859 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 NIPBLQ6KC79 2804 aaeCLIP5.35□□□□□ -1.55
LIMA1-202ENST00000394943 PFDN1O60925 122 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 MT-CO2P00403 227 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 HOXA1P49639 335 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-202ENST00000394943 TPPP2P59282 170 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 POLR2GP62487 172 aaKnown RBP eCLIP5.35□□□□□ -1.55
LIMA1-202ENST00000394943 GAMTQ14353 236 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 OR8G2PQ6IF36 304 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 STRAPQ9Y3F4 350 aaKnown RBP5.35□□□□□ -1.55
LIMA1-202ENST00000394943 IGHV4OR15-8A0A075B7B6 117 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 A0A087WW49 117 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 TRAV25A0A0B4J276 109 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 LINC00854A0A1B0GVQ3 168 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 IGSF23A1L1A6 192 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 CCL24O00175 119 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 MPDU1O75352 247 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 CSN3P07498 182 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 CRYBB3P26998 211 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 RAB11AP62491 216 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 ARL16Q0P5N6 197 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 SLC16A13Q7RTY0 426 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 TMEM252Q8N6L7 170 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 UBAC2Q8NBM4 344 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 OR1N2Q8NGR9 330 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 WDR89Q96FK6 387 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-202ENST00000394943 PSENENQ9NZ42 101 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 WDR83OSQ9Y284 106 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 TIMM9Q9Y5J7 89 aa5.35□□□□□ -1.55
LIMA1-202ENST00000394943 S100A11P31949 105 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 PRR20EP86478 221 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 PRR20CP86479 221 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 PRR20DP86480 221 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 PRR20BP86481 221 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 PRR20AP86496 221 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 OR5T1Q8NG75 326 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 OR2G3Q8NGZ4 309 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 PPP1R1CQ8WVI7 109 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 MRPL27Q9P0M9 148 aaKnown RBP5.34□□□□□ -1.55
LIMA1-202ENST00000394943 IGKV1OR2-108A0A075B7D4 117 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 TSPAN15O95858 294 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 IFNA17P01571 189 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 ZNF329Q86UD4 541 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 SUN5Q8TC36 379 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 MED28Q9H204 178 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 OR5AC2Q9NZP5 309 aa5.34□□□□□ -1.55
LIMA1-202ENST00000394943 ZNF785A8K8V0 405 aa5.34□□□□□ -1.56
LIMA1-202ENST00000394943 CCSO14618 274 aa5.34□□□□□ -1.56
LIMA1-202ENST00000394943 CD5P06127 495 aa5.34□□□□□ -1.56
LIMA1-202ENST00000394943 RELQ04864 619 aaPredicted RBP5.34□□□□□ -1.56
LIMA1-202ENST00000394943 BEAN1Q3B7T3 259 aa5.34□□□□□ -1.56
LIMA1-202ENST00000394943 C19orf35Q6ZS72 473 aa5.34□□□□□ -1.56
LIMA1-202ENST00000394943 ACOT7LQ6ZUV0 252 aa5.34□□□□□ -1.56
LIMA1-202ENST00000394943 PINX1Q96BK5 328 aaKnown RBP5.34□□□□□ -1.56
LIMA1-202ENST00000394943 ENY2Q9NPA8 101 aa5.34□□□□□ -1.56
LIMA1-202ENST00000394943 OR2J3O76001 311 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 IGLV1-51P01701 117 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 OPCMLQ14982 345 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 C9orf152Q5JTZ5 239 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 ZNF600Q6ZNG1 722 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 SLC25A31Q9H0C2 315 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 LINC00527Q9UJ94 153 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 CSPG4Q6UVK1 2322 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 CEBPZOSA8MTT3 80 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 A8MTW9 85 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 TRBV12-3P01733 135 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 RPL29P47914 159 aaKnown RBP5.33□□□□□ -1.56
LIMA1-202ENST00000394943 C1orf194Q5T5A4 169 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 TREML4Q6UXN2 200 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 TMEM213A2RRL7 107 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 MRPS12O15235 138 aaKnown RBP5.33□□□□□ -1.56
LIMA1-202ENST00000394943 LINC00869P0C866 280 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 PF4V1P10720 104 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 HOXD3P31249 432 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-202ENST00000394943 NPBWR1P48145 328 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 BCAP31P51572 246 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 EWSR1Q01844 656 aaKnown RBP eCLIP5.33□□□□□ -1.56
LIMA1-202ENST00000394943 C3orf56Q8N813 242 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 KLHL30-AS1Q8NEE0 82 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 DCUN1D4Q92564 292 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 SLC35E1Q96K37 410 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 CLUHP3Q96NS8 147 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 CHRDL1Q9BU40 450 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 NPVFQ9HCQ7 196 aa5.33□□□□□ -1.56
LIMA1-202ENST00000394943 HEYLQ9NQ87 328 aaPredicted RBP5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms