RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 MT-CO2P00403 227 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 AMBPP02760 352 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 GZMBP10144 247 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 NPY1RP25929 384 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 RND2P52198 227 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 RPL30P62888 115 aaKnown RBP8.4□□□□□ -1.07
COL6A3-205ENST00000392004 PMS2P11Q13670 270 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 OR1B1Q8NGR6 318 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 BLNKQ8WV28 456 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 TMEM37Q8WXS4 190 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF705FA8MVS1 300 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-205ENST00000392004 H3BTX0 84 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF705DP0CH99 300 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF705BP0CI00 300 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-205ENST00000392004 SLC25A6P12236 298 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 MMP9P14780 707 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 FGF8P55075 233 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-205ENST00000392004 TMEM241Q24JQ0 296 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 HIST2H2BDQ6DRA6 164 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF664Q8N3J9 261 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 C10orf105Q8TEF2 133 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 NCOR1P1Q9H4R4 102 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 SDF2L1Q9HCN8 221 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 NAT8Q9UHE5 227 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 VAX2Q9UIW0 290 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 SOX21Q9Y651 276 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-205ENST00000392004 NDUFS8O00217 210 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 GALR1P47211 349 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 SLC38A11Q08AI6 406 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 TMEM155Q4W5P6 130 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 MMD2Q8IY49 270 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 CIB3Q96Q77 187 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-205ENST00000392004 ATG101Q9BSB4 218 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 QTRT1Q9BXR0 403 aaKnown RBP8.39□□□□□ -1.07
COL6A3-205ENST00000392004 ACTR3CQ9C0K3 210 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-205ENST00000392004 PCSK5Q92824 1860 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 A0A1W2PPQ1 181 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 MOSP00540 346 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 SLC35B1P78383 322 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 OR10W1Q8NGF6 305 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 PRNDQ9UKY0 176 aa8.39□□□□□ -1.07
COL6A3-205ENST00000392004 KBTBD11O94819 623 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 SAA1P0DJI8 122 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-205ENST00000392004 CT45A6P0DMU7 189 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 CT45A5P0DMU8 189 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 CT45A7P0DMV0 189 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF25P17030 456 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-205ENST00000392004 CNTFRP26992 372 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 GATA4P43694 442 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 HLA-DRB5Q30154 266 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 OR4A47Q6IF82 309 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 SELENOHQ8IZQ5 122 aaKnown RBP8.38□□□□□ -1.07
COL6A3-205ENST00000392004 RPUSD4Q96CM3 377 aaKnown RBP8.38□□□□□ -1.07
COL6A3-205ENST00000392004 RCC1LQ96I51 464 aaKnown RBP8.38□□□□□ -1.07
COL6A3-205ENST00000392004 TPPP3Q9BW30 176 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 TIMM8BQ9Y5J9 83 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-205ENST00000392004 COX7A2P2O60397 106 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 PRTN3P24158 256 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 HERPUD1Q15011 391 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 BSXQ3C1V8 233 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 C16orf82Q7Z2V1 217 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 RNASEH2CQ8TDP1 164 aaKnown RBP8.38□□□□□ -1.07
COL6A3-205ENST00000392004 NPFFR1Q9GZQ6 430 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 FKBP11Q9NYL4 201 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 KIR2DS2P43631 304 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 TNFRSF9Q07011 255 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 ACOT6Q3I5F7 207 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-205ENST00000392004 ZNF705AQ6ZN79 300 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-205ENST00000392004 TCF19Q9Y242 345 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 TRAV1-1A0A0B4J248 108 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 IGKV1-6A0A0C4DH72 117 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 NAPSAO96009 420 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 CA2P00918 260 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 IGHV4-59P01825 116 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 HTD2P86397 168 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 FAM90A2PQ658T7 463 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 NEU1Q99519 415 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 SERTAD4Q9NUC0 356 aa8.38□□□□□ -1.07
COL6A3-205ENST00000392004 IGHV1-3A0A0C4DH29 117 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 IGHV2-70DA0A0C4DH43 119 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 DUXBA0A1W2PPF3 345 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 MAP1LC3B2A6NCE7 125 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 CGB1A6NKQ9 187 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 LINC00473A8K010 186 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 INAFM1C9JVW0 142 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 YPEL1O60688 119 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 CFHR2P36980 270 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 PAX5Q02548 391 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 KCNIP4Q6PIL6 250 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 OR8I2Q8N0Y5 310 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 BCL6BQ8N143 479 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-205ENST00000392004 DYNLRB2Q8TF09 96 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 YPEL2Q96QA6 119 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 RSG1Q9BU20 258 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 MAP1LC3BQ9GZQ8 125 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 RPRMQ9NS64 109 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 TRAV3A0A0B4J244 114 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 HOXA3O43365 443 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-205ENST00000392004 PSMB3P49720 205 aa8.37□□□□□ -1.07
COL6A3-205ENST00000392004 ERVK11-1P61568 191 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms