RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SPSB3Q6PJ21 355 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 ENKURQ8TC29 256 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 MITD1Q8WV92 249 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 ATP6V0BQ99437 205 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 ZNF436Q9C0F3 470 aaPredicted RBP10.14□□□□□ -0.79
VPS28-202ENST00000377348 MAGT1Q9H0U3 335 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 CACFD1Q9UGQ2 172 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 SORL1Q92673 2214 aa10.14□□□□□ -0.79
VPS28-202ENST00000377348 A8MWP6 167 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 CORTO00230 105 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 CCSO14618 274 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 GNG7O60262 68 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 IFNA10P01566 189 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 GP9P14770 177 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 DEFB121Q5J5C9 76 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 NRARPQ7Z6K4 114 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 DUSP18Q8NEJ0 188 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 OR10C1Q96KK4 312 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 TXN2Q99757 166 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 SIGLEC8Q9NYZ4 499 aa10.13□□□□□ -0.79
VPS28-202ENST00000377348 FAM90A26D6RGX4 464 aa10.12□□□□□ -0.79
VPS28-202ENST00000377348 NUPL2O15504 423 aaKnown RBP10.12□□□□□ -0.79
VPS28-202ENST00000377348 ZNF207O43670 478 aaKnown RBP10.12□□□□□ -0.79
VPS28-202ENST00000377348 IFNA21P01568 189 aa10.12□□□□□ -0.79
VPS28-202ENST00000377348 CBLN1P23435 193 aa10.12□□□□□ -0.79
VPS28-202ENST00000377348 NPBWR1P48145 328 aa10.12□□□□□ -0.79
VPS28-202ENST00000377348 CD300EQ496F6 205 aaPredicted RBP10.12□□□□□ -0.79
VPS28-202ENST00000377348 UXS1Q8NBZ7 420 aa10.12□□□□□ -0.79
VPS28-202ENST00000377348 DYNLRB2Q8TF09 96 aa10.12□□□□□ -0.79
VPS28-202ENST00000377348 ZNF431Q8TF32 576 aaPredicted RBP10.12□□□□□ -0.79
VPS28-202ENST00000377348 TMEM190Q8WZ59 177 aa10.12□□□□□ -0.79
VPS28-202ENST00000377348 C20orf24Q9BUV8 137 aa10.12□□□□□ -0.79
VPS28-202ENST00000377348 GAR1Q9NY12 217 aaKnown RBP10.12□□□□□ -0.79
VPS28-202ENST00000377348 U3KQ87 197 aa10.12□□□□□ -0.79
VPS28-202ENST00000377348 DNAH9Q9NYC9 4486 aa10.11□□□□□ -0.79
VPS28-202ENST00000377348 WRBO00258 174 aa10.11□□□□□ -0.79
VPS28-202ENST00000377348 NDUFA4O00483 81 aa10.11□□□□□ -0.79
VPS28-202ENST00000377348 SYNGR2O43760 224 aa10.11□□□□□ -0.79
VPS28-202ENST00000377348 TMEM50AO95807 157 aa10.11□□□□□ -0.79
VPS28-202ENST00000377348 OR4D5Q8NGN0 318 aa10.11□□□□□ -0.79
VPS28-202ENST00000377348 RNASEH2CQ8TDP1 164 aaKnown RBP10.11□□□□□ -0.79
VPS28-202ENST00000377348 PALMDQ9NP74 551 aa10.11□□□□□ -0.79
VPS28-202ENST00000377348 MLXQ9UH92 298 aa10.11□□□□□ -0.79
VPS28-202ENST00000377348 UFC1Q9Y3C8 167 aa10.11□□□□□ -0.79
VPS28-202ENST00000377348 RPS10-NUDT3A0A1W2PQS6 291 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 C15orf62A8K5M9 175 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 CLN5O75503 358 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 MED6O75586 246 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 YIF1AO95070 293 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 SCGB1D2O95969 90 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 IFNA4P05014 189 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 NKX2-1P43699 371 aaPredicted RBP10.1□□□□□ -0.79
VPS28-202ENST00000377348 RND2P52198 227 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 DEFA1P59665 94 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 DEFA3P59666 94 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 POLR2GP62487 172 aaKnown RBP eCLIP10.1□□□□□ -0.79
VPS28-202ENST00000377348 ID3Q02535 119 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 RELQ04864 619 aaPredicted RBP10.1□□□□□ -0.79
VPS28-202ENST00000377348 IAH1Q2TAA2 248 aaPredicted RBP10.1□□□□□ -0.79
VPS28-202ENST00000377348 DEFB114Q30KQ6 69 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 PRSS54Q6PEW0 395 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 BTNL8Q6UX41 500 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 NOXA1Q86UR1 476 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 C12orf45Q8N5I9 185 aaPredicted RBP10.1□□□□□ -0.79
VPS28-202ENST00000377348 ZBTB8BQ8NAP8 495 aaPredicted RBP10.1□□□□□ -0.79
VPS28-202ENST00000377348 OR4X1Q8NH49 305 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 GSKIPQ9P0R6 139 aa10.1□□□□□ -0.79
VPS28-202ENST00000377348 PAIP2BQ9ULR5 123 aaKnown RBP10.1□□□□□ -0.79
VPS28-202ENST00000377348 LSM4Q9Y4Z0 139 aaKnown RBP10.1□□□□□ -0.79
VPS28-202ENST00000377348 FAM25EA8MYX2 175 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 H3BP45 60 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 SSSCA1O60232 199 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 C8orf88P0DMB2 117 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 ELLP55199 621 aaPredicted RBP10.09□□□□□ -0.79
VPS28-202ENST00000377348 CD69Q07108 199 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 TIGITQ495A1 244 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 LCN12Q6JVE5 192 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 TOMM20LQ6UXN7 152 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 SLC16A13Q7RTY0 426 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 ACY3Q96HD9 319 aa10.09□□□□□ -0.79
VPS28-202ENST00000377348 DAZ1Q9NQZ3 744 aaKnown RBP10.09□□□□□ -0.79
VPS28-202ENST00000377348 IGHV3-49A0A0A0MS15 119 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 ZNF785A8K8V0 405 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 INMT-MINDY4F8WBC2 141 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 IGKV1-17P01599 117 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 IL5P05113 134 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 SLC25A4P12235 298 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 SPANXN5Q5MJ07 72 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 TMEM116Q8NCL8 245 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 OR2K2Q8NGT1 345 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 NPIPB3Q92617 1050 aa10.08□□□□□ -0.8
VPS28-202ENST00000377348 WDR89Q96FK6 387 aaPredicted RBP10.08□□□□□ -0.8
VPS28-202ENST00000377348 CIB3Q96Q77 187 aaPredicted RBP10.08□□□□□ -0.8
VPS28-202ENST00000377348 TECRQ9NZ01 308 aaKnown RBP10.08□□□□□ -0.8
VPS28-202ENST00000377348 MRPL27Q9P0M9 148 aaKnown RBP10.08□□□□□ -0.8
VPS28-202ENST00000377348 PUS1Q9Y606 427 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS28-202ENST00000377348 IGHV3OR16-13A0A075B7E8 117 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 IGHV3-74A0A0B4J1X5 117 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 C5orf51A6NDU8 294 aa10.07□□□□□ -0.8
VPS28-202ENST00000377348 K7EMT4 169 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms