RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MIR17HGQ75NE6 70 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 KRT222Q8N1A0 295 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 PFN4Q8NHR9 129 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 BORCS7Q96B45 105 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 TRIM4Q9C037 500 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 RNASE7Q9H1E1 156 aaKnown RBP0.69□□□□□ -2.3
VPS13A-206ENST00000376646 CKLFQ9UBR5 152 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 STRCQ7RTU9 1775 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 FSIP2Q5CZC0 6907 aa0.69□□□□□ -2.3
VPS13A-206ENST00000376646 HMGXB3Q12766 1538 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 IGKV1D-42A0A075B6H8 117 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 FADS1O60427 444 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 IFNA10P01566 189 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 CTXN2P0C2S0 81 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 FKBP2P26885 142 aaKnown RBP0.68□□□□□ -2.3
VPS13A-206ENST00000376646 DEFA3P59666 94 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 CCL7P80098 99 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 FADDQ13158 208 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 DEFB119Q8N690 84 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 GDPD1Q8N9F7 314 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 OR52R1Q8NGF1 315 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 PRAP1Q96NZ9 151 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 YIPF3Q9GZM5 350 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 CCDC90BQ9GZT6 254 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 SLC39A9Q9NUM3 307 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 IDI2-AS1Q9NZ38 188 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 CYSLTR1Q9Y271 337 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 ERGIC3Q9Y282 383 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 MED13Q9UHV7 2174 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 F8W036 122 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 HTR1AP08908 422 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 RBP1P09455 135 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 SMIM10L2AP0DMW4 78 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 SMIM10L2BP0DMW5 78 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 SPI1P17947 270 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 G6PCP35575 357 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 REEP5Q00765 189 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 CDK5R1Q15078 307 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 KHDC3LQ587J8 217 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 TMEM97Q5BJF2 176 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 RPS19BP1Q86WX3 136 aaKnown RBP0.68□□□□□ -2.3
VPS13A-206ENST00000376646 C15orf53Q8NAA6 179 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 OR51A2Q8NGJ7 313 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 CT55Q8WUE5 264 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 DGCR14Q96DF8 476 aaKnown RBP0.68□□□□□ -2.3
VPS13A-206ENST00000376646 ADAT1Q9BUB4 502 aaKnown RBP0.68□□□□□ -2.3
VPS13A-206ENST00000376646 FBXO5Q9UKT4 447 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 ABCA12Q86UK0 2595 aa0.68□□□□□ -2.3
VPS13A-206ENST00000376646 FLNBO75369 2602 aaKnown RBP0.68□□□□□ -2.3
VPS13A-206ENST00000376646 HEATR5BQ9P2D3 2071 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 ECM29Q5VYK3 1845 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 hCG_1818297A0A087WSY0 165 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 A8MT66 165 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 PDE6DO43924 150 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 OR2J2O76002 312 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 HAND1O96004 215 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 ANP32AP39687 249 aaKnown RBP0.67□□□□□ -2.3
VPS13A-206ENST00000376646 ERVS71-1P61550 626 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 ZNF846Q147U1 533 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 SPA17Q15506 151 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 SURF2Q15527 256 aaPredicted RBP0.67□□□□□ -2.3
VPS13A-206ENST00000376646 IAH1Q2TAA2 248 aaPredicted RBP0.67□□□□□ -2.3
VPS13A-206ENST00000376646 C12orf74Q32Q52 190 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 DPPA3Q6W0C5 159 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 Q6ZQT0 140 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 OR6V1Q8N148 313 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 HIST3H2BBQ8N257 126 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 SIGLECL1Q8N7X8 197 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 OR4E2Q8NGC2 313 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 OR5A1Q8NGJ0 315 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 C20orf27Q9GZN8 174 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 TLNRD1Q9H1K6 362 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 UQCC1Q9NVA1 299 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 NCOA1Q15788 1441 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 SCN10AQ9Y5Y9 1956 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 NEO1Q92859 1461 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 LRP5O75197 1615 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 MYOFQ9NZM1 2061 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 OR5F1O95221 314 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 ZNF682O95780 498 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 IFNA6P05013 189 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 SERPINE1P05121 402 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 CTSDP07339 412 aaPredicted RBP0.67□□□□□ -2.3
VPS13A-206ENST00000376646 SMIM17P0DL12 118 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 S100A4P26447 101 aaKnown RBP0.67□□□□□ -2.3
VPS13A-206ENST00000376646 HIST1H3AP68431 136 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 H3F3AP84243 136 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 Q8N2B8 174 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 LINC00471Q8N535 108 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 OR52L1Q8NGH7 329 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 SIGMAR1Q99720 223 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 ZNF106Q9H2Y7 1883 aaKnown RBP0.67□□□□□ -2.3
VPS13A-206ENST00000376646 ARHGEF11O15085 1522 aa0.67□□□□□ -2.3
VPS13A-206ENST00000376646 PLXND1Q9Y4D7 1925 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 NEBP20929 6669 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 ITPR3Q14573 2671 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 NCOR2Q9Y618 2525 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 RIC1Q4ADV7 1423 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 IGKV3D-7A0A0C4DH55 119 aa0.66□□□□□ -2.3
VPS13A-206ENST00000376646 IGKV3OR2-268A0A0C4DH90 116 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms