RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 NDUFA12Q9UI09 145 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 SIGLEC9Q9Y336 463 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 NCOA6Q14686 2063 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TRAV5A0A0B4J249 113 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 PDCD6O75340 191 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 IGHV2-70P01814 119 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 IGHV4-30-4P0DP06 118 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 IGHV4-31P0DP07 118 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 CD24P25063 80 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 ODF1Q14990 250 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 ZIC4Q8N9L1 334 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 PARP4Q9UKK3 1724 aaKnown RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 NALCNQ8IZF0 1738 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 AKAP11Q9UKA4 1901 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 A0A1B0GW15 77 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 LINC01565O15544 149 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 NDUFC2O95298 119 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 PKIAP61925 76 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 PIGYQ3MUY2 71 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF876PQ49A33 203 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TMEM52BQ4KMG9 183 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 FAM74A3Q4VXF1 159 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 CLLU1OSQ5K130 101 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 C17orf99Q6UX52 265 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 TEX43Q6ZNM6 134 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 C3orf22Q8N5N4 141 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 OR11H6Q8NGC7 330 aa3.94□□□□□ -1.78
SCN1A-202ENST00000375405 CICQ96RK0 1608 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-202ENST00000375405 A0A0J9YWU9 116 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 IGLL5B9A064 214 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 PCP4P48539 62 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 MUSTN1Q8IVN3 82 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 KIR2DL5BQ8NHK3 375 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 MPC1Q9Y5U8 109 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 RFNGQ9Y644 331 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 CACNA1HO95180 2353 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 TIMM23O14925 209 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 EPPINO95925 133 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 TRA2AQ13595 282 aaKnown RBP eCLIP3.93□□□□□ -1.78
SCN1A-202ENST00000375405 SMDT1Q9H4I9 107 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 KCNE3Q9Y6H6 103 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 COL1A1P02452 1464 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-202ENST00000375405 BCL9LQ86UU0 1499 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 NPIPB13A6NJU9 1138 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 NPIPB5A8MRT5 1133 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 FCMRO60667 390 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 CRYGCP07315 174 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 PPICP45877 212 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 CAPZBP47756 277 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 ADAMTSL4Q6UY14 1074 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 NPIPB3Q92617 1050 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF488Q96MN9 340 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 KLK5Q9Y337 293 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-202ENST00000375405 A0A1B0GX51 115 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 AMBPP02760 352 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 SDF2Q99470 211 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 CCL28Q9NRJ3 127 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 TREX1Q9NSU2 369 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 IGHV3-16A0A0C4DH30 117 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 FAM74A7A6NL05 159 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 C21orf140B9A014 251 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 IGHG2P01859 326 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 SLC25A1P53007 311 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 TMEM219Q86XT9 240 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 IL36BQ9NZH7 164 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 TET2Q6N021 2002 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-202ENST00000375405 SCRT1Q9BWW7 348 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 KIDINS220Q9ULH0 1771 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 LIPT2A6NK58 231 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 A8MXK9 166 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 H0Y980 276 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 TBX6O95947 436 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-202ENST00000375405 FUSP35637 526 aaKnown RBP eCLIP3.93□□□□□ -1.78
SCN1A-202ENST00000375405 Q6ZS52 159 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 LINC00596Q86U02 117 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 FER1L6-AS1Q8NA97 138 aa3.93□□□□□ -1.78
SCN1A-202ENST00000375405 NEURL4Q96JN8 1562 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 LMO7DNF2Z398 122 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 PRSS23O95084 383 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 UMODP07911 640 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 PRSS42Q7Z5A4 293 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 RNF166Q96A37 237 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-202ENST00000375405 IMMP1LQ96LU5 166 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 SPXQ9BT56 116 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 TMEM131LA2VDJ0 1609 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 RIMBP3CA6NJZ7 1639 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 RIMBP3BA6NNM3 1639 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 RIMBP3Q9UFD9 1639 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 MS4A8Q9BY19 250 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 A4GALTQ9NPC4 353 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 H3BUT2 72 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 WNT2P09544 360 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 ZNF146Q15072 292 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 C1orf194Q5T5A4 169 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 IGF2-ASQ6U949 168 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 RNF138Q8WVD3 245 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 TRBV5-5A0A0J9YX44 114 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 GAGE12HA6NDE8 117 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 NDUFA2O43678 99 aa3.92□□□□□ -1.78
SCN1A-202ENST00000375405 MESP2Q0VG99 397 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms