RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 FTH1P19P0C7X4 201 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 C8orf88P0DMB2 117 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 AARDQ4LEZ3 155 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 LCN12Q6JVE5 192 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 KIR2DL5AQ8N109 375 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 OR10X1Q8NGY0 326 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 TMEM208Q9BTX3 173 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 MALRD1Q5VYJ5 2156 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 C9JCJ5 164 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 MOSP00540 346 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 CGB3P0DN86 165 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 CGB7P0DN87 165 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 CD24P25063 80 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 SELENOTP62341 195 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 ERHP84090 104 aaKnown RBP9.87□□□□□ -0.83
CLIP3-201ENST00000360535 WNK2Q9Y3S1 2297 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 GPX1P07203 203 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 ZADH2Q8N4Q0 377 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 RBMXL3Q8N7X1 1067 aaKnown RBP9.87□□□□□ -0.83
CLIP3-201ENST00000360535 TXN2Q99757 166 aa9.87□□□□□ -0.83
CLIP3-201ENST00000360535 LHBP01229 141 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 APOA2P02652 100 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 RNASE2P10153 161 aaKnown RBP9.86□□□□□ -0.83
CLIP3-201ENST00000360535 RAB4AP20338 218 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 TNFSF4P23510 183 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 RPL19P84098 196 aaKnown RBP9.86□□□□□ -0.83
CLIP3-201ENST00000360535 MAJINQ3KP22 176 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 TMEM136Q6ZRR5 245 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 C11orf52Q96A22 123 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 ADTRPQ96IZ2 230 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 MIEN1Q9BRT3 115 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 SLC25A33Q9BSK2 321 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 SLC25A10Q9UBX3 287 aaPredicted RBP9.86□□□□□ -0.83
CLIP3-201ENST00000360535 CDC42EP3Q9UKI2 254 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 APCSP02743 223 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 RPLP1P05386 114 aaKnown RBP9.86□□□□□ -0.83
CLIP3-201ENST00000360535 CX3CL1P78423 397 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 RELQ04864 619 aaPredicted RBP9.86□□□□□ -0.83
CLIP3-201ENST00000360535 MMDQ15546 238 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 SPATA45Q537H7 98 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 DNAJC4Q9NNZ3 241 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 AMMECR1Q9Y4X0 333 aaPredicted RBP9.86□□□□□ -0.83
CLIP3-201ENST00000360535 A0A1W2PN81 502 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 A0A1W2PS18 150 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 CORTO00230 105 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 BMPR1BO00238 502 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 RPL8P62917 257 aaKnown RBP9.86□□□□□ -0.83
CLIP3-201ENST00000360535 CD69Q07108 199 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 SLAQ13239 276 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 TIMM23BQ5SRD1 257 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 LEMD1Q68G75 181 aa9.86□□□□□ -0.83
CLIP3-201ENST00000360535 K7EM74 188 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 TCF21O43680 179 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 SLC25A17O43808 307 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 OR1B1Q8NGR6 318 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 FLYWCH2Q96CP2 140 aaKnown RBP9.85□□□□□ -0.83
CLIP3-201ENST00000360535 PAXXQ9BUH6 204 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 GNB1LQ9BYB4 327 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 SAP30LQ9HAJ7 183 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 RPUSD1Q9UJJ7 312 aaKnown RBP9.85□□□□□ -0.83
CLIP3-201ENST00000360535 hADV38S2A0JD32 116 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 C10orf113Q5VZT2 155 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 RNASEKQ6P5S7 137 aaKnown RBP9.85□□□□□ -0.83
CLIP3-201ENST00000360535 BORCS7Q96B45 105 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 GSX1Q9H4S2 264 aaPredicted RBP9.85□□□□□ -0.83
CLIP3-201ENST00000360535 RAB9BQ9NP90 201 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 TPSG1Q9NRR2 321 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 MRPL36Q9P0J6 103 aaKnown RBP9.85□□□□□ -0.83
CLIP3-201ENST00000360535 FAM215AQ9Y5M1 114 aa9.85□□□□□ -0.83
CLIP3-201ENST00000360535 ISLRO14498 428 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 CR1LQ2VPA4 569 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 TEX43Q6ZNM6 134 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 ZNF439Q8NDP4 499 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 OR2D3Q8NGH3 330 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 SPTBN1Q01082 2364 aaKnown RBP9.84□□□□□ -0.83
CLIP3-201ENST00000360535 DLEU1O43261 78 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 IGLV2-8P01709 118 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 AMY1AP04745 511 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 PMCHL1Q16048 86 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 WDR73Q6P4I2 378 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 Q6ZN92 141 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 SLC25A48Q6ZT89 311 aaKnown RBP9.84□□□□□ -0.83
CLIP3-201ENST00000360535 OR1L8Q8NGR8 309 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 SFXN3Q9BWM7 321 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 SLC25A2Q9BXI2 301 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 FNDC4Q9H6D8 234 aaPredicted RBP9.84□□□□□ -0.83
CLIP3-201ENST00000360535 LRBAP50851 2863 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 M0QZ24 198 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 Q56UQ5 140 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 OSTCQ9NRP0 149 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 ARHGAP32A7KAX9 2087 aa9.84□□□□□ -0.83
CLIP3-201ENST00000360535 H0Y8G0 127 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 HSBP1O75506 76 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 SLC25A5P05141 298 aaKnown RBP9.83□□□□□ -0.84
CLIP3-201ENST00000360535 C3orf79P0CE67 100 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 CD40P25942 277 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 CFHR2P36980 270 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 PPOXP50336 477 aa9.83□□□□□ -0.84
CLIP3-201ENST00000360535 FOXA3P55318 350 aaPredicted RBP9.83□□□□□ -0.84
CLIP3-201ENST00000360535 WT1-ASQ06250 92 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms