RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 IGHV3-15A0A0B4J1V0 119 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 FAM106CPP0CH98 169 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 RLFQ13129 1914 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 MSGN1A6NI15 193 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 VWC2LB2RUY7 222 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 SLAQ13239 276 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 WDR82Q6UXN9 313 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 VN1R4Q7Z5H5 301 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 DTX4Q9Y2E6 619 aa10.69□□□□□ -0.7
COL6A3-203ENST00000353578 BRCA1P38398 1863 aaKnown RBP10.69□□□□□ -0.7
COL6A3-203ENST00000353578 IGHV2-26A0A0B4J1V2 119 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 ZG16O60844 167 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 UPK2O00526 184 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 SPATA25Q9BR10 227 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 LDLRAD4O15165 306 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 CEACAM4O75871 244 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 RAX2Q96IS3 184 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 POLR3KQ9Y2Y1 108 aaPredicted RBP10.68□□□□□ -0.7
COL6A3-203ENST00000353578 MED13LQ71F56 2210 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 TCTEX1D4Q5JR98 221 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 CSRP3P50461 194 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.68□□□□□ -0.7
COL6A3-203ENST00000353578 C9orf40Q8IXQ3 194 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 ASPHD2Q6ICH7 369 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 DDB2Q92466 427 aa10.68□□□□□ -0.7
COL6A3-203ENST00000353578 SPTY2D1-AS1A0A0U1RR47 76 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 SSPNQ14714 243 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 LINC01555Q8NAE3 123 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 IFI27L2Q9H2X8 130 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 DENND4CQ5VZ89 1909 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 PIN1P1O15428 100 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 PVRIGQ6DKI7 326 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 CGAP01215 116 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 SCTP09683 121 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 CFPP27918 469 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 CBLN3Q6UW01 205 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 WFDC8Q8IUA0 241 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 SHISA5Q8N114 240 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 TNCP24821 2201 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 LEPROTO15243 131 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 PDE6HQ13956 83 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 DMRTC1Q5HYR2 192 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 PCSK4Q6UW60 755 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 TANC1Q9C0D5 1861 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 C3orf79P0CE67 100 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 IGLC2P0DOY2 106 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 IGLC3P0DOY3 106 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 ZFP36L2P47974 494 aaKnown RBP10.67□□□□□ -0.7
COL6A3-203ENST00000353578 ATOX1O00244 68 aa10.67□□□□□ -0.7
COL6A3-203ENST00000353578 COX8AP10176 69 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 HLA-DMBP28068 263 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 ATP6V0E2Q8NHE4 81 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 NPSP0C0P6 89 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 KLK15Q9H2R5 256 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 SPINT1O43278 529 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 MORN2Q502X0 79 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 FABP5P3A8MUU1 101 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 CXorf67Q86X51 503 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-203ENST00000353578 H3BQ85 93 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 DRD3P35462 400 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 SRSF3P84103 164 aaKnown RBP10.66□□□□□ -0.7
COL6A3-203ENST00000353578 Q9H3A6 140 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 A0A1W2PQF6 199 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 ID3Q02535 119 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 SLC25A47Q6Q0C1 308 aa10.66□□□□□ -0.7
COL6A3-203ENST00000353578 TSSC4Q9Y5U2 329 aaPredicted RBP10.66□□□□□ -0.7
COL6A3-203ENST00000353578 IGHV3-20A0A0C4DH32 117 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 ZDHHC16Q969W1 377 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 R3HDMLQ9H3Y0 253 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 LIFP15018 202 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 SNAI2O43623 268 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 LINC00271P0C7V0 271 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 LYPD1Q8N2G4 141 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 HES7Q9BYE0 225 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 NPFFR1Q9GZQ6 430 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 NPC2P61916 151 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 IQCF6A8MYZ5 107 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 THADAQ6YHU6 1953 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 DUTP33316 252 aaKnown RBP10.65□□□□□ -0.7
COL6A3-203ENST00000353578 FAM106AQ4KMX7 169 aa10.65□□□□□ -0.7
COL6A3-203ENST00000353578 METTL12A8MUP2 240 aa10.65□□□□□ -0.71
COL6A3-203ENST00000353578 K7EMI3 77 aa10.65□□□□□ -0.71
COL6A3-203ENST00000353578 A0A087X0K7 114 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 CTGFP29279 349 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 HIST1H4AP62805 103 aaKnown RBP10.64□□□□□ -0.71
COL6A3-203ENST00000353578 MRPL20Q9BYC9 149 aaKnown RBP10.64□□□□□ -0.71
COL6A3-203ENST00000353578 GP6Q9HCN6 339 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 LHFPL6Q9Y693 200 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 GNRHR2Q96P88 292 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 LDLRAD1Q5T700 205 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 CALYQ9NYX4 217 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 MALRD1Q5VYJ5 2156 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 TRAV24A0A0B4J272 114 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 C8orf44Q96CB5 159 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 NBASA2RRP1 2371 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 PRTN3P24158 256 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 C5orf47Q569G3 176 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 PAPPA2Q9BXP8 1791 aa10.64□□□□□ -0.71
COL6A3-203ENST00000353578 COA6Q5JTJ3 125 aaKnown RBP10.64□□□□□ -0.71
COL6A3-203ENST00000353578 C1orf43Q9BWL3 253 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms