RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 LHFPL5Q8TAF8 219 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 NEUROG1Q92886 237 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 GPR82Q96P67 336 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 SIGLEC9Q9Y336 463 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 TAS2R60P59551 318 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 ZNF383Q8NA42 475 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 SLC50A1Q9BRV3 221 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 AGMATQ9BSE5 352 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 OR51M1Q9H341 326 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 NAGKQ9UJ70 344 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 A0A1B0GWJ7 208 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 EBLN2Q6P2I7 272 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 SVIPQ8NHG7 77 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 FAM210BQ96KR6 192 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 SLC25A33Q9BSK2 321 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 ZNF586Q9NXT0 402 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 JKAMPQ9P055 326 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 FLNAP21333 2647 aaKnown RBP5.62□□□□□ -1.51
SF3B1-201ENST00000335508 PLXNB1O43157 2135 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 BUB1B-PAK6H3BSN5 160 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 P01737 135 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 VKORC1L1Q8N0U8 176 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 PRO1933Q9H354 126 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 CHD9Q3L8U1 2897 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 PGPA6NDG6 321 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 SOD3P08294 240 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 SMIM17P0DL12 118 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 RPL30P62888 115 aaKnown RBP5.62□□□□□ -1.51
SF3B1-201ENST00000335508 ZNF506Q5JVG8 444 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 MYPOPQ86VE0 399 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-201ENST00000335508 MBD3L1Q8WWY6 194 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 COL6A5A8TX70 2615 aa5.62□□□□□ -1.51
SF3B1-201ENST00000335508 SIAH2O43255 324 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 RPS20P60866 119 aaKnown RBP5.61□□□□□ -1.51
SF3B1-201ENST00000335508 GAMTQ14353 236 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 ZNF585BQ52M93 769 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 RBPMS2Q6ZRY4 209 aaKnown RBP5.61□□□□□ -1.51
SF3B1-201ENST00000335508 C11orf53Q8IXP5 236 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 OR4C5Q8NGB2 326 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 USMG5Q96IX5 58 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 WNT10AQ9GZT5 417 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 FOXI3A8MTJ6 420 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-201ENST00000335508 H0YJW9 148 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 H3BUX3 64 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 OR2J3O76001 311 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 ADORA2A-AS1P86434 159 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 LY6EQ16553 131 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 TMEM18Q96B42 140 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 NUTF2P61970 127 aaKnown RBP5.61□□□□□ -1.51
SF3B1-201ENST00000335508 PSG9Q00887 426 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 HS3ST6Q96QI5 342 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 CLEC9AQ6UXN8 241 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 RNF125Q96EQ8 232 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 PRORYQ9H606 182 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 H3BQ15 152 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 IL6RP08887 468 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-201ENST00000335508 RHOGP84095 191 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 AWAT1Q58HT5 328 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 BLNKQ8WV28 456 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 SH3BGRL3Q9H299 93 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 ARL2-SNX15V9GYD0 113 aa5.61□□□□□ -1.51
SF3B1-201ENST00000335508 LOC105371267A0A1B0GV96 52 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 GCHFRP30047 84 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 FCGR2BP31994 310 aaPredicted RBP5.6□□□□□ -1.51
SF3B1-201ENST00000335508 SNRPD3P62318 126 aaKnown RBP5.6□□□□□ -1.51
SF3B1-201ENST00000335508 RIGQ13278 110 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 NAT8BQ9UHF3 227 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 F11RQ9Y624 299 aaKnown RBP5.6□□□□□ -1.51
SF3B1-201ENST00000335508 TRAV41A0A0B4J266 112 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 IGHV2-70DA0A0C4DH43 119 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 LINC00473A8K010 186 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 LHBP01229 141 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 SAA4P35542 130 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 TPPP2P59282 170 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 SGMS2Q8NHU3 365 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 TXN2Q99757 166 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 TRAV14DV4A0A0A6YYC5 116 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 C15orf65H3BRN8 121 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 LY6HO94772 140 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 FGF8P55075 233 aaPredicted RBP5.6□□□□□ -1.51
SF3B1-201ENST00000335508 ODF1Q14990 250 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 CYB561D1Q8N8Q1 229 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 OR2T8A6NH00 312 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 RAB5AP20339 215 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 CMC4P56277 68 aaPredicted RBP5.6□□□□□ -1.51
SF3B1-201ENST00000335508 OR10J6PQ8NGY7 276 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 IGHV1-69DA0A0B4J2H0 117 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 TCRBV4S1A1TA0A5B7 111 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 IGHV1-69P01742 117 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 HLA-DQA1P01909 254 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 LYPD2Q6UXB3 125 aa5.6□□□□□ -1.51
SF3B1-201ENST00000335508 UQCRFS1P47985 274 aa5.59□□□□□ -1.51
SF3B1-201ENST00000335508 PMS2P11Q13670 270 aa5.59□□□□□ -1.51
SF3B1-201ENST00000335508 C8orf46Q8TAG6 207 aa5.59□□□□□ -1.51
SF3B1-201ENST00000335508 MUC22E2RYF6 1773 aaPredicted RBP5.59□□□□□ -1.51
SF3B1-201ENST00000335508 RAMP3O60896 148 aa5.59□□□□□ -1.51
SF3B1-201ENST00000335508 Q6AWC8 147 aa5.59□□□□□ -1.51
SF3B1-201ENST00000335508 TREML4Q6UXN2 200 aa5.59□□□□□ -1.51
SF3B1-201ENST00000335508 C22orf46C9J442 243 aa5.59□□□□□ -1.51
SF3B1-201ENST00000335508 NDUFB4O95168 129 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms